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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00209
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00209
Identity
- Kingdom:
- phage
Quality
90.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-92
Domain cluster:
rep: term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00210__D2-94
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10544.16 best | T5orf172 | 20.7 | 6.70e-04 | 98.9% | 82.7% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.57 | 42.0 | 4.29e-01 | 81.3% | 82.0% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 39.0 | 4.20e-01 | 82.4% | 86.8% |
| 2ab5A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 43.0 | 3.82e-01 | 100.0% | 57.5% |
| 3en9A03 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 40.0 | 4.32e-01 | 87.9% | 100.0% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 35.0 | 3.48e-01 | 100.0% | 65.6% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.52 | 34.0 | 3.55e-01 | 100.0% | 71.4% |
| 1konA02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.52 | 41.0 | 4.17e-01 | 86.8% | 85.6% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.89e-01 | 82.4% | 37.4% |
| 1h3dA03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 34.0 | 3.81e-01 | 100.0% | 94.0% |
| 3p06A00 | 3.30.230.110 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.50 | 42.0 | 3.45e-01 | 100.0% | 83.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4016088 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.77 | 72.0 | 6.85e-01 | 100.0% | 93.3% |
| 3553310 | 12.5.1.18 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › UPA-FIIND | 0.62 | 55.0 | 4.95e-01 | 97.8% | 91.2% |
| 3199555 | 219.1.1.93 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 | 0.60 | 53.0 | 4.81e-01 | 100.0% | 89.6% |
| 5051463 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.58 | 46.0 | 4.84e-01 | 100.0% | 96.2% |
| 3627272 | 3333.1.1.0 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 | 0.55 | 47.0 | 4.00e-01 | 96.7% | 97.4% |
| 3489258 | 306.8.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like | 0.53 | 41.0 | 3.98e-01 | 100.0% | 73.3% |
| 3987406 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.53 | 40.0 | 4.27e-01 | 83.5% | 97.3% |
| 1141934 | 3162.1.1.1 ↗ | a+b two layers › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › DUF6840 | 0.52 | 34.0 | 3.43e-01 | 100.0% | 63.5% |
| 3255162 | 3662.1.1.1 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 | 0.50 | 30.0 | 2.85e-01 | 100.0% | 47.0% |
D2
high
residues 169-245
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o0sA02 | 1.20.1370.30 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.69 | 54.0 | 4.80e-01 | 90.9% | 59.3% |
| 1k3kA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.60 | 45.0 | 3.77e-01 | 83.1% | 57.5% |
| 2jrtA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 4.15e-01 | 75.3% | 79.1% |
| 2ix5A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 45.0 | 3.60e-01 | 83.1% | 59.4% |
| 2af0A02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.55 | 39.0 | 3.95e-01 | 87.0% | 73.8% |
| 3pvuA02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.54 | 41.0 | 4.08e-01 | 87.0% | 78.8% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.54 | 38.0 | 3.63e-01 | 75.3% | 64.0% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 36.0 | 3.72e-01 | 70.1% | 97.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3397717 | 193.1.1.18 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › DUF2465 | 0.58 | 38.0 | 3.22e-01 | 94.8% | 40.8% |
| 3939782 | 7566.1.1.2 ↗ | a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N | 0.57 | 45.0 | 3.36e-01 | 85.7% | 52.5% |
| 5051495 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.56 | 43.0 | 4.04e-01 | 83.1% | 77.9% |
| 4340348 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 41.0 | 3.44e-01 | 80.5% | 67.9% |
| 3931169 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.53 | 44.0 | 4.09e-01 | 93.5% | 90.0% |
| 4550967 | 3843.1.1.29 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF2105 | 0.51 | 41.0 | 3.90e-01 | 85.7% | 73.3% |
| 4871594 | 11.40.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly | 0.51 | 42.0 | 2.82e-01 | 94.8% | 25.4% |
| 4952624 | 3843.1.1.29 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF2105 | 0.51 | 39.0 | 3.86e-01 | 84.4% | 78.8% |
| 4002046 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 42.0 | 3.73e-01 | 92.2% | 84.5% |
D3
high
residues 249-295
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 61.0 | 5.09e-01 | 97.9% | 64.4% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.62 | 43.0 | 3.22e-01 | 74.5% | 85.2% |
| 1u5tB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 48.0 | 4.07e-01 | 91.5% | 63.5% |
| 4nq1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 51.0 | 3.16e-01 | 100.0% | 30.3% |
| 7ylrA02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.53 | 39.0 | 2.99e-01 | 78.7% | 40.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3421266 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 58.0 | 4.47e-01 | 100.0% | 46.7% |
| 3442072 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.71 | 57.0 | 4.40e-01 | 100.0% | 44.8% |
| 3646654 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 57.0 | 4.45e-01 | 100.0% | 46.7% |
| 5042781 | 101.1.2.599 ↗ | alpha arrays › HTH › HTH › winged helix domain › ELP3_N | 0.69 | 59.0 | 5.41e-01 | 100.0% | 72.3% |
| 4980414 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.66 | 53.0 | 4.59e-01 | 95.7% | 85.0% |
| 3614550 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 45.0 | 2.98e-01 | 97.9% | 98.0% |
| 4137725 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.56 | 39.0 | 2.49e-01 | 72.3% | 26.3% |
D4
medium
residues 93-165
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.62 | 49.0 | 4.33e-01 | 87.7% | 86.0% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.56 | 44.0 | 3.82e-01 | 91.8% | 97.6% |
| 4nlbA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.56 | 43.0 | 4.05e-01 | 89.0% | 75.5% |
| 3enhC01 | 3.30.2380.10 | Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB | 0.55 | 38.0 | 3.18e-01 | 71.2% | 82.0% |
| 3m1tA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.52 | 43.0 | 3.06e-01 | 97.3% | 69.5% |
| 1nbwA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 37.0 | 3.20e-01 | 78.1% | 87.9% |
| 6yigA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 42.0 | 4.02e-01 | 94.5% | 100.0% |
| 3f8tA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 2.86e-01 | 93.2% | 84.8% |
| 3b1nA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 43.0 | 2.94e-01 | 100.0% | 80.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4244661 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.67 | 46.0 | 4.95e-01 | 72.6% | 98.3% |
| 5063074 | 304.123.1.1 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like › CGI-121 | 0.60 | 43.0 | 3.53e-01 | 76.7% | 77.2% |
| 5024933 | 304.123.1.0 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like | 0.59 | 41.0 | 3.73e-01 | 75.3% | 100.0% |
| 4980358 | 304.123.1.1 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like › CGI-121 | 0.58 | 41.0 | 3.52e-01 | 76.7% | 80.0% |
| 5011451 | 304.123.1.0 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like | 0.57 | 41.0 | 3.54e-01 | 76.7% | 85.8% |
| 4160317 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.55 | 41.0 | 3.61e-01 | 80.8% | 73.9% |
| 4930858 | 304.123.1.1 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like › CGI-121 | 0.55 | 43.0 | 3.42e-01 | 87.7% | 80.0% |
| 5074724 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.55 | 40.0 | 3.79e-01 | 79.5% | 63.3% |
| 3830022 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.55 | 44.0 | 3.92e-01 | 91.8% | 75.5% |
| 3643148 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.54 | 37.0 | 4.08e-01 | 71.2% | 100.0% |
| 3952587 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.53 | 44.0 | 3.69e-01 | 93.2% | 96.9% |
| 3575981 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.52 | 42.0 | 4.16e-01 | 95.9% | 81.2% |
| 3956611 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.52 | 39.0 | 3.90e-01 | 83.6% | 82.7% |
| 3376853 | 3718.1.1.12 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › DUF1666 | 0.51 | 35.0 | 2.66e-01 | 72.6% | 43.1% |
| 5084048 | 3831.1.1.15 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › HAAS | 0.50 | 35.0 | 3.39e-01 | 74.0% | 88.2% |
| 3166682 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.50 | 39.0 | 3.61e-01 | 87.7% | 86.0% |