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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00212
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00212
Identity
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-83
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2duwA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.71 | 55.0 | 4.67e-01 | 84.1% | 80.3% |
| 3dfuA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.70 | 62.0 | 5.34e-01 | 100.0% | 84.5% |
| 2o3jA03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 58.0 | 4.30e-01 | 96.3% | 60.9% |
| 3q7rA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 52.0 | 4.76e-01 | 84.1% | 78.2% |
| 3zpgA02 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.67 | 51.0 | 3.85e-01 | 84.1% | 53.2% |
| 2ejwA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 60.0 | 4.61e-01 | 100.0% | 63.2% |
| 5buqA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.66 | 58.0 | 3.81e-01 | 100.0% | 32.9% |
| 3mtjA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 58.0 | 4.53e-01 | 98.8% | 92.2% |
| 4da9B00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 58.0 | 4.32e-01 | 100.0% | 92.6% |
| 3l12B00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.66 | 52.0 | 3.61e-01 | 87.8% | 77.6% |
| 4pg4A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 59.0 | 4.75e-01 | 100.0% | 76.9% |
| 3rqiA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 57.0 | 4.96e-01 | 98.8% | 92.1% |
| 1d5wA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 56.0 | 4.96e-01 | 98.8% | 87.0% |
| 4d6yA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 56.0 | 4.96e-01 | 98.8% | 92.6% |
| 2xblD00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.64 | 56.0 | 4.30e-01 | 100.0% | 58.5% |
| 4dgsA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 56.0 | 4.58e-01 | 100.0% | 68.4% |
| 1k68A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 56.0 | 4.68e-01 | 98.8% | 87.1% |
| 3cf4A02 | 3.40.50.2030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 56.0 | 4.25e-01 | 100.0% | 66.8% |
| 3eodA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 55.0 | 4.93e-01 | 100.0% | 78.3% |
| 2qzjA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 55.0 | 4.84e-01 | 100.0% | 88.4% |
| 3eafA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 53.0 | 4.06e-01 | 100.0% | 54.1% |
| 7pvaB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 54.0 | 4.82e-01 | 100.0% | 80.7% |
| 3luaA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 53.0 | 4.70e-01 | 100.0% | 80.8% |
| 7bmfA01 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.60 | 53.0 | 4.11e-01 | 100.0% | 61.1% |
| 3cs3A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 53.0 | 4.54e-01 | 100.0% | 68.0% |
| 3bchA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.58 | 51.0 | 3.94e-01 | 100.0% | 46.4% |
| 3d8uB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 51.0 | 4.54e-01 | 100.0% | 77.5% |
| 3clkB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 50.0 | 4.46e-01 | 100.0% | 95.1% |
| 4idcA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 49.0 | 4.42e-01 | 100.0% | 85.2% |
| 5gizA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 49.0 | 4.26e-01 | 98.8% | 82.9% |
| 5b51A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 49.0 | 4.18e-01 | 98.8% | 79.5% |
| 4pawB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 47.0 | 3.69e-01 | 100.0% | 55.1% |
| 3shtA02 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.53 | 42.0 | 4.07e-01 | 100.0% | 77.8% |
| 3olcX01 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.53 | 46.0 | 4.46e-01 | 98.8% | 95.8% |
| 1vx7O02 | 3.100.10.10 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › | 0.52 | 40.0 | 3.89e-01 | 82.9% | 76.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 136487 | 2008.1.1.36 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EcoRII-C | 0.72 | 63.0 | 4.58e-01 | 96.3% | 55.0% |
| 5036499 | 2007.1.9.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › AIRC | 0.71 | 56.0 | 4.72e-01 | 84.1% | 80.7% |
| 144716 | 2003.1.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N | 0.69 | 54.0 | 4.37e-01 | 85.4% | 70.6% |
| 4933765 | 2002.1.1.236 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS | 0.68 | 55.0 | 4.43e-01 | 87.8% | 86.3% |
| 5008341 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.68 | 60.0 | 4.25e-01 | 100.0% | 51.3% |
| 5043512 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.67 | 58.0 | 4.71e-01 | 100.0% | 93.9% |
| 4603663 | 2003.1.1.43 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_3 | 0.65 | 58.0 | 4.55e-01 | 100.0% | 71.4% |
| 3607887 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.64 | 47.0 | 4.02e-01 | 76.8% | 96.9% |
| 4945820 | 2006.1.2.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH_CID | 0.64 | 57.0 | 4.04e-01 | 100.0% | 45.5% |
| 4416928 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.62 | 53.0 | 3.91e-01 | 100.0% | 64.5% |
| 3604021 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.62 | 54.0 | 4.45e-01 | 100.0% | 71.2% |
| 3834798 | 2007.6.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 | 0.62 | 55.0 | 4.10e-01 | 100.0% | 50.9% |
| 1173035 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.62 | 54.0 | 5.02e-01 | 100.0% | 93.5% |
| 1851858 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.62 | 53.0 | 4.80e-01 | 100.0% | 94.9% |
| 4489941 | 7512.1.1.9 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › LpxB | 0.61 | 53.0 | 3.99e-01 | 98.8% | 72.9% |
| 4838308 | 4044.1.1.1 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane | 0.60 | 53.0 | 4.26e-01 | 100.0% | 66.1% |
| 4359315 | 2007.6.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 | 0.58 | 51.0 | 3.76e-01 | 100.0% | 38.7% |
| 1627713 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.58 | 51.0 | 4.80e-01 | 100.0% | 92.1% |
| 3973990 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.57 | 43.0 | 3.96e-01 | 81.7% | 70.0% |
| 4069072 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.57 | 50.0 | 4.67e-01 | 100.0% | 87.6% |
| 2979132 | 2007.6.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 | 0.57 | 50.0 | 3.64e-01 | 100.0% | 61.9% |
| 5006321 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.55 | 47.0 | 3.25e-01 | 100.0% | 47.1% |
| 4387071 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.52 | 44.0 | 4.11e-01 | 98.8% | 97.3% |
| 4936278 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.52 | 46.0 | 4.28e-01 | 100.0% | 97.1% |
| 4957208 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 39.0 | 3.18e-01 | 84.1% | 58.2% |
| 3454559 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.50 | 41.0 | 3.70e-01 | 93.9% | 89.2% |
D2
high
residues 94-175
Domain cluster:
representative