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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00221
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00221
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-78
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dc0A00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.63 | 45.0 | 2.71e-01 | 100.0% | 10.8% |
| 1oaaA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 49.0 | 3.29e-01 | 90.2% | 37.8% |
| 6eudA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 46.0 | 3.38e-01 | 83.6% | 74.9% |
| 3wxmB03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.60 | 44.0 | 3.85e-01 | 96.7% | 48.6% |
| 2odkA00 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.60 | 35.0 | 3.72e-01 | 78.7% | 66.0% |
| 4oifA02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.59 | 46.0 | 3.20e-01 | 86.9% | 86.6% |
| 3hynA00 | 3.40.50.11200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 47.0 | 3.47e-01 | 93.4% | 85.5% |
| 3kzxA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.59 | 47.0 | 3.77e-01 | 95.1% | 75.4% |
| 1gs5A00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.58 | 48.0 | 3.31e-01 | 100.0% | 82.6% |
| 3p0rA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.58 | 49.0 | 3.47e-01 | 100.0% | 52.7% |
| 2ajtA01 | 3.40.50.10940 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 46.0 | 3.38e-01 | 90.2% | 36.6% |
| 4aw7A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 47.0 | 3.10e-01 | 100.0% | 54.8% |
| 3kegA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.57 | 47.0 | 3.38e-01 | 95.1% | 57.3% |
| 1t5bB00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.57 | 47.0 | 3.43e-01 | 100.0% | 54.0% |
| 6upsA01 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.57 | 44.0 | 3.35e-01 | 86.9% | 73.5% |
| 3qi7A02 | 3.40.50.11390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 48.0 | 3.63e-01 | 100.0% | 52.7% |
| 2w7tA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 44.0 | 2.95e-01 | 88.5% | 68.9% |
| 3guvA00 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.56 | 42.0 | 3.22e-01 | 82.0% | 75.2% |
| 3gbvA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 47.0 | 3.60e-01 | 100.0% | 59.7% |
| 2wq7A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 44.0 | 3.60e-01 | 100.0% | 83.9% |
| 4rheC00 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.54 | 45.0 | 3.23e-01 | 98.4% | 61.7% |
| 5i7iA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.54 | 40.0 | 2.63e-01 | 100.0% | 16.4% |
| 6gvdA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 40.0 | 2.61e-01 | 85.2% | 46.5% |
| 3tqdA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 43.0 | 2.99e-01 | 96.7% | 28.8% |
| 2dlxA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 42.0 | 3.64e-01 | 98.4% | 53.1% |
| 3i6dA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 42.0 | 3.28e-01 | 95.1% | 56.1% |
| 2ejbA00 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.53 | 44.0 | 3.28e-01 | 100.0% | 59.7% |
| 6ckmA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 44.0 | 3.09e-01 | 100.0% | 33.8% |
| 5ywwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.52 | 44.0 | 3.68e-01 | 98.4% | 56.5% |
| 3i6eA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.52 | 42.0 | 2.95e-01 | 100.0% | 45.1% |
| 1ykgA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.52 | 41.0 | 3.22e-01 | 91.8% | 62.3% |
| 3jr7A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.52 | 43.0 | 3.58e-01 | 98.4% | 67.8% |
| 3i3vB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 40.0 | 3.08e-01 | 91.8% | 41.4% |
| 2pyyB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 38.0 | 3.07e-01 | 93.4% | 38.4% |
| 6gs2C01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.51 | 43.0 | 2.97e-01 | 100.0% | 31.5% |
| 1xg8A00 | 3.40.30.30 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Hypothetical protein sa0798. | 0.51 | 42.0 | 3.64e-01 | 100.0% | 61.1% |
| 2cxcA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 35.0 | 3.43e-01 | 70.5% | 100.0% |
| 2vvpC00 | 3.40.1400.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribose 5-phosphate Isomerase B; Chain: A, › Sugar-phosphate isomerase, RpiB/LacA/LacB | 0.51 | 40.0 | 3.08e-01 | 88.5% | 75.9% |
| 1f1jA00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 41.0 | 2.94e-01 | 100.0% | 39.1% |
| 3ja8601 | 3.30.1640.10 | Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 | 0.50 | 37.0 | 3.25e-01 | 83.6% | 85.7% |
| 4ry9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 41.0 | 3.18e-01 | 98.4% | 59.3% |
| 4fr2A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 40.0 | 3.06e-01 | 100.0% | 75.0% |
| 3kp8A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 39.0 | 3.52e-01 | 96.7% | 59.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3886723 | 2007.9.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › TIR | 0.71 | 57.0 | 4.22e-01 | 88.5% | 92.9% |
| 3193942 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.64 | 46.0 | 2.67e-01 | 100.0% | 8.0% |
| 4155808 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.64 | 46.0 | 2.76e-01 | 100.0% | 10.4% |
| 3363628 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.62 | 47.0 | 3.19e-01 | 86.9% | 90.0% |
| 3942753 | 2007.1.14.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiK | 0.62 | 45.0 | 3.75e-01 | 80.3% | 100.0% |
| 3820177 | 7580.1.1.1 ↗ | a/b three-layered sandwiches › RibA-like › RibA-like › RibA-like › GTP_cyclohydro2 | 0.59 | 50.0 | 3.68e-01 | 96.7% | 48.5% |
| 2044880 | 7552.1.1.1 ↗ | a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase | 0.58 | 42.0 | 2.56e-01 | 100.0% | 10.7% |
| 4545537 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.58 | 46.0 | 3.00e-01 | 88.5% | 61.4% |
| 3676093 | 7516.1.1.20 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_34 | 0.58 | 43.0 | 3.07e-01 | 100.0% | 24.9% |
| 5003718 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.57 | 49.0 | 3.60e-01 | 100.0% | 57.1% |
| 3328428 | 2485.1.1.74 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_4 | 0.57 | 38.0 | 3.56e-01 | 91.8% | 56.0% |
| 3589309 | 2007.2.2.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › LMWPc | 0.56 | 48.0 | 3.60e-01 | 98.4% | 85.6% |
| 4095244 | 2007.9.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › CAP12-PCTIR_TIR | 0.56 | 47.0 | 3.59e-01 | 98.4% | 78.7% |
| 3975405 | 7512.1.1.13 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PS_pyruv_trans | 0.55 | 46.0 | 3.30e-01 | 100.0% | 100.0% |
| 3966568 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 44.0 | 2.99e-01 | 98.4% | 37.8% |
| 3302044 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.55 | 43.0 | 2.87e-01 | 86.9% | 94.6% |
| 3469739 | 2485.1.1.74 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_4 | 0.55 | 40.0 | 3.46e-01 | 100.0% | 49.0% |
| 4970835 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 46.0 | 3.25e-01 | 98.4% | 81.4% |
| 4611529 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.54 | 46.0 | 3.82e-01 | 100.0% | 66.1% |
| 3287255 | 2007.1.19.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Acyl_transf_1 | 0.54 | 46.0 | 3.02e-01 | 100.0% | 64.7% |
| 4988116 | 2007.1.14.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX | 0.54 | 44.0 | 3.64e-01 | 100.0% | 93.8% |
| 4984534 | 2007.1.3.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Oxidored_q6 | 0.54 | 45.0 | 3.26e-01 | 100.0% | 84.4% |
| 3055858 | 2007.1.1.18 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DUF4960 | 0.54 | 45.0 | 3.06e-01 | 100.0% | 40.3% |
| 4956194 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.53 | 36.0 | 3.32e-01 | 70.5% | 86.3% |
| 3616194 | 2006.1.1.20 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › PhoLip_ATPase_C | 0.53 | 44.0 | 3.15e-01 | 100.0% | 74.4% |
| 4975427 | 2007.15.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr | 0.53 | 44.0 | 3.62e-01 | 100.0% | 63.1% |
| 3205900 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.53 | 40.0 | 2.73e-01 | 86.9% | 57.5% |
| 4031137 | 2007.19.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Glycerate kinase I (Pfam 02595) domain I › Glycerate kinase I (Pfam 02595) domain I › Gly_kinase | 0.53 | 45.0 | 3.44e-01 | 100.0% | 85.8% |
| 3228002 | 7516.1.1.52 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotid_trans | 0.53 | 44.0 | 2.90e-01 | 100.0% | 71.3% |
| 4477243 | 7512.1.1.9 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › LpxB | 0.52 | 43.0 | 3.11e-01 | 98.4% | 43.4% |
| 4929037 | 327.11.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_NusA_2nd | 0.52 | 38.0 | 3.60e-01 | 82.0% | 98.8% |
| 4597020 | 7516.1.1.20 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_34 | 0.52 | 45.0 | 2.85e-01 | 100.0% | 48.6% |
| 4366956 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.52 | 35.0 | 3.22e-01 | 88.5% | 51.8% |
| 3996291 | 4351.1.1.1 ↗ | alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 | 0.52 | 41.0 | 2.82e-01 | 95.1% | 24.5% |
| 2454249 | 2002.1.1.104 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_2_C | 0.52 | 42.0 | 3.02e-01 | 100.0% | 44.4% |
| 4633951 | 2007.1.12.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Type II 3-dehydroquinate dehydratase › Exonuc_VII_L | 0.51 | 39.0 | 2.60e-01 | 86.9% | 41.4% |
| 2098131 | 2007.1.1.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Glyco_hydro_42M | 0.51 | 41.0 | 2.92e-01 | 95.1% | 48.4% |
| 3300280 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.51 | 41.0 | 2.95e-01 | 100.0% | 95.1% |
| 5071855 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.51 | 42.0 | 3.17e-01 | 98.4% | 43.0% |
| 3691895 | 7516.1.1.26 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 | 0.50 | 39.0 | 2.35e-01 | 91.8% | 60.7% |
| 3953648 | 7579.1.1.84 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PE-PPE | 0.50 | 41.0 | 2.86e-01 | 100.0% | 77.3% |