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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00265

Bact-Vir

term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00265

Identity

Kingdom:
phage

Quality

54.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 111-254
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 30.0 3.96e-01 82.6% 96.0%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.56 37.0 4.18e-01 93.1% 89.6%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.55 35.0 4.15e-01 84.7% 92.9%
1m53A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 24.0 3.14e-01 75.0% 75.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5123 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.56 37.0 4.18e-01 93.1% 89.6%
193014 304.43.1.2 a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › Isocitrate_DH_C_bact 0.50 32.0 3.61e-01 92.4% 83.0%
4985745 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.50 34.0 3.26e-01 83.3% 58.2%
D2 high residues 288-411_581-591
PDB
D3 high residues 415-470
PDB
D4 high residues 781-877
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 47.0 4.24e-01 75.3% 82.6%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 40.0 4.43e-01 75.3% 78.9%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 32.0 3.60e-01 95.9% 61.3%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 3.72e-01 75.3% 82.6%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 3.93e-01 77.3% 81.1%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 51.0 5.06e-01 100.0% 97.1%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.57 43.0 4.44e-01 80.4% 86.8%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 40.0 3.36e-01 80.4% 42.6%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 4.14e-01 75.3% 83.9%
4b9gA00 2.60.40.3480 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 4.05e-01 91.8% 96.6%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.55 34.0 4.15e-01 85.6% 100.0%
4pibA00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.55 48.0 4.01e-01 100.0% 92.0%
3shsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 4.37e-01 94.8% 93.5%
4lzkA00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.54 48.0 4.11e-01 100.0% 86.2%
4n6qA00 2.60.40.3960 Mainly Beta › Sandwich › Immunoglobulin-like › Velvet domain 0.54 48.0 3.97e-01 100.0% 78.1%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.54 48.0 4.43e-01 100.0% 80.0%
1a90A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.71e-01 74.2% 80.6%
6cmzB03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 38.0 3.57e-01 95.9% 60.2%
2dewX02 2.60.40.1700 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain 0.54 43.0 3.68e-01 87.6% 99.4%
1g4mA01 2.60.40.840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 3.88e-01 99.0% 91.8%
7wvzA03 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 43.0 3.14e-01 100.0% 31.9%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.56e-01 76.3% 82.6%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 3.32e-01 80.4% 55.3%
1y7uA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 43.0 3.74e-01 100.0% 56.7%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.60e-01 80.4% 81.3%
4n2cA02 2.60.40.1700 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain 0.51 41.0 3.45e-01 87.6% 93.1%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 4.31e-01 100.0% 93.8%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 43.0 3.68e-01 100.0% 55.7%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.51 36.0 3.09e-01 72.2% 51.9%
4n6mB00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.56e-01 77.3% 80.2%
3loyA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.34e-01 71.1% 72.8%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 4.04e-01 95.9% 90.7%
3v6oB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 44.0 4.41e-01 96.9% 95.0%
2d9qB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 4.39e-01 97.9% 98.9%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3604270 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.72 64.0 5.80e-01 96.9% 87.7%
4957500 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.69 61.0 6.16e-01 100.0% 97.9%
4422887 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.67 52.0 5.22e-01 100.0% 81.0%
3237781 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 33.0 3.94e-01 99.0% 69.2%
4947993 283.2.1.19 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › NMD3 0.63 56.0 5.39e-01 100.0% 94.5%
3466554 844.1.1.1 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub 0.61 39.0 2.81e-01 100.0% 22.3%
4204257 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.61 45.0 4.06e-01 77.3% 74.4%
3740914 5.1.4.80 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Utp8_b_propeller 0.60 42.0 2.84e-01 72.2% 33.3%
5041466 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 55.0 4.96e-01 100.0% 89.2%
3747438 3343.1.1.2 alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.60 52.0 3.19e-01 100.0% 36.3%
3471961 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.99e-01 90.7% 94.4%
5025077 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.59 36.0 4.25e-01 72.2% 96.7%
3503747 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.58 49.0 4.34e-01 92.8% 95.0%
3447383 7575.1.1.0 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.58 48.0 3.19e-01 88.7% 45.9%
5050905 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.58 43.0 3.45e-01 78.4% 91.1%
3220027 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.58 40.0 3.08e-01 72.2% 74.6%
2556671 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.57 31.0 3.70e-01 96.9% 80.3%
3169468 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 41.0 2.72e-01 76.3% 20.7%
4330393 243.3.1.23 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3027 0.57 36.0 3.71e-01 74.2% 68.2%
3400775 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 39.0 3.63e-01 72.2% 92.0%
4962506 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 37.0 4.14e-01 97.9% 92.9%
3870460 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 48.0 4.45e-01 94.8% 89.5%
3696055 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 40.0 3.67e-01 76.3% 77.8%
3517955 101.1.12.3 alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.55 36.0 3.18e-01 72.2% 43.3%
3489226 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 47.0 3.99e-01 92.8% 82.9%
3483694 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.28e-01 89.7% 87.8%
3747962 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.55 44.0 4.61e-01 100.0% 94.4%
4945607 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 39.0 4.15e-01 78.4% 84.7%
3493007 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 4.16e-01 100.0% 96.1%
3899111 11.1.1.616 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_KY 0.54 48.0 4.60e-01 99.0% 88.7%
3962436 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 42.0 3.86e-01 100.0% 64.0%
3951658 244.2.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.54 38.0 3.42e-01 99.0% 52.6%
3945348 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.54 35.0 3.48e-01 84.5% 63.0%
3261363 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 4.57e-01 99.0% 90.0%
3492760 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 4.03e-01 100.0% 93.5%
4104753 243.1.1.92 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26366 0.54 38.0 3.49e-01 75.3% 77.8%
4981121 375.1.1.5 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L44 0.54 34.0 3.91e-01 79.4% 91.3%
3934735 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 39.0 3.94e-01 78.4% 99.0%
3768629 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.53 37.0 3.63e-01 73.2% 69.7%
4003734 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 46.0 4.12e-01 96.9% 82.1%
3552846 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.30e-01 97.9% 76.7%
4004011 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 34.0 3.26e-01 95.9% 56.4%
3514642 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 3.82e-01 96.9% 80.0%
4946153 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 39.0 3.53e-01 100.0% 53.8%
4976922 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.68e-01 89.7% 76.5%
3475866 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 42.0 3.85e-01 100.0% 64.4%
3516772 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 46.0 3.96e-01 96.9% 74.8%
5043948 11.1.1.410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BatD 0.53 46.0 4.47e-01 100.0% 99.1%
3192526 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.53 47.0 3.86e-01 100.0% 79.4%
3496239 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 41.0 3.80e-01 100.0% 63.7%
3559409 11.1.1.609 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NTCP5_P3_N 0.52 44.0 4.36e-01 94.8% 92.4%
3595890 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.52 44.0 3.67e-01 94.8% 82.6%
4296554 11.1.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.52 46.0 4.39e-01 100.0% 93.0%
4429745 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.51 45.0 3.94e-01 100.0% 64.0%
4461362 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.51 37.0 3.51e-01 76.3% 76.5%