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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00270
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00270
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-133
Domain cluster:
rep: OR234010.1__WNV46927.1__LPLmcIH19_0010__00010__D13-114
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d37B01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.71 | 50.0 | 4.18e-01 | 100.0% | 43.7% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.71 | 48.0 | 5.17e-01 | 100.0% | 83.9% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.69 | 52.0 | 4.39e-01 | 100.0% | 48.6% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 50.0 | 5.10e-01 | 100.0% | 78.4% |
| 4q63A00 | 2.40.10.430 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.68 | 45.0 | 4.76e-01 | 100.0% | 76.3% |
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.68 | 51.0 | 5.38e-01 | 78.3% | 94.7% |
| 2w5eA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 38.0 | 4.71e-01 | 100.0% | 90.8% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.67 | 47.0 | 4.77e-01 | 71.7% | 76.2% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 37.0 | 3.95e-01 | 100.0% | 60.4% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.64 | 50.0 | 4.72e-01 | 82.1% | 75.2% |
| 1mbmA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 37.0 | 4.19e-01 | 100.0% | 78.9% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.63 | 29.0 | 3.21e-01 | 100.0% | 52.3% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.61 | 27.0 | 2.75e-01 | 99.1% | 40.4% |
| 2gsbA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.60 | 26.0 | 2.94e-01 | 98.1% | 50.0% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.60 | 43.0 | 4.32e-01 | 100.0% | 74.3% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.59 | 46.0 | 3.91e-01 | 81.1% | 85.5% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.58 | 52.0 | 5.24e-01 | 100.0% | 96.3% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 34.0 | 2.92e-01 | 100.0% | 36.9% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 52.0 | 4.43e-01 | 100.0% | 73.8% |
| 4g2sA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.57 | 26.0 | 2.69e-01 | 96.2% | 42.5% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.57 | 44.0 | 4.26e-01 | 100.0% | 71.3% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 52.0 | 4.62e-01 | 100.0% | 77.6% |
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 46.0 | 4.67e-01 | 100.0% | 88.6% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.56 | 51.0 | 4.52e-01 | 100.0% | 85.9% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 50.0 | 4.63e-01 | 100.0% | 89.1% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.55 | 50.0 | 4.37e-01 | 100.0% | 79.4% |
| 3mcaB01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.54 | 29.0 | 3.09e-01 | 91.5% | 57.3% |
| 2rkcA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 32.0 | 2.15e-01 | 100.0% | 15.3% |
| 2ausC02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.54 | 34.0 | 2.81e-01 | 94.3% | 33.9% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 3.46e-01 | 92.5% | 68.5% |
| 1r3eA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.52 | 42.0 | 3.38e-01 | 92.5% | 42.5% |
| 1k8wA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.51 | 42.0 | 3.32e-01 | 92.5% | 55.6% |
| 3q0bX00 | 2.30.280.10 | Mainly Beta › Roll › PUA domain-like › SRA-YDG | 0.51 | 44.0 | 4.01e-01 | 98.1% | 73.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5026244 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 46.0 | 4.94e-01 | 96.2% | 72.2% |
| 4214150 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.74 | 48.0 | 4.74e-01 | 100.0% | 62.7% |
| 4031285 | 1.1.13.64 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal | 0.72 | 57.0 | 6.15e-01 | 99.1% | 97.8% |
| 4883825 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.71 | 56.0 | 6.01e-01 | 99.1% | 95.7% |
| 4982501 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 43.0 | 4.49e-01 | 98.1% | 67.4% |
| 184486 | 1.1.13.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st | 0.70 | 50.0 | 5.55e-01 | 100.0% | 96.3% |
| 3974181 | 1.1.5.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 | 0.70 | 50.0 | 5.35e-01 | 100.0% | 86.7% |
| 3970225 | 1.1.13.68 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27125 | 0.68 | 48.0 | 5.12e-01 | 100.0% | 85.6% |
| 3973341 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 50.0 | 5.53e-01 | 94.3% | 96.5% |
| 1871771 | 1.1.5.43 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like | 0.67 | 46.0 | 4.58e-01 | 100.0% | 67.6% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.67 | 33.0 | 3.86e-01 | 96.2% | 66.7% |
| 5002753 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.64 | 48.0 | 5.33e-01 | 79.2% | 98.8% |
| 4539244 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.63 | 43.0 | 4.37e-01 | 100.0% | 70.5% |
| 5055336 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.63 | 39.0 | 4.25e-01 | 83.0% | 73.3% |
| 3970827 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.63 | 48.0 | 5.28e-01 | 98.1% | 100.0% |
| 3968713 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.62 | 49.0 | 5.25e-01 | 100.0% | 97.8% |
| 4646862 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.62 | 47.0 | 4.67e-01 | 100.0% | 76.4% |
| 4398032 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.62 | 47.0 | 4.60e-01 | 100.0% | 73.0% |
| 4988103 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.62 | 51.0 | 5.33e-01 | 100.0% | 96.8% |
| 3603127 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.62 | 49.0 | 5.26e-01 | 100.0% | 100.0% |
| 4393593 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.61 | 49.0 | 5.19e-01 | 100.0% | 95.8% |
| 3972305 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.61 | 48.0 | 5.11e-01 | 99.1% | 98.9% |
| 3966429 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.61 | 48.0 | 5.09e-01 | 99.1% | 98.9% |
| 4118973 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.60 | 46.0 | 4.42e-01 | 100.0% | 70.8% |
| 4156970 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.60 | 46.0 | 4.43e-01 | 100.0% | 70.8% |
| 4417145 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.60 | 46.0 | 4.51e-01 | 100.0% | 74.8% |
| 4137973 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.60 | 45.0 | 4.53e-01 | 100.0% | 77.3% |
| 5002662 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.60 | 49.0 | 5.08e-01 | 93.4% | 93.0% |
| 4278559 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.59 | 45.0 | 4.48e-01 | 100.0% | 77.3% |
| 3059162 | 1.1.13.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 | 0.59 | 54.0 | 5.12e-01 | 100.0% | 94.4% |
| 3259730 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 47.0 | 4.66e-01 | 100.0% | 83.6% |
| 3511358 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 48.0 | 5.01e-01 | 94.3% | 97.0% |
| 5002750 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 50.0 | 5.11e-01 | 99.1% | 97.1% |
| 3256920 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 47.0 | 4.49e-01 | 92.5% | 76.8% |
| 4247994 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.56 | 49.0 | 5.02e-01 | 99.1% | 99.0% |
| 5028172 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 46.0 | 4.41e-01 | 96.2% | 76.7% |
| 3754223 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.53 | 43.0 | 3.31e-01 | 90.6% | 48.2% |
| 4254454 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 43.0 | 3.32e-01 | 92.5% | 52.5% |
| 4617847 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.51 | 42.0 | 3.34e-01 | 90.6% | 54.3% |
| 4054945 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.51 | 42.0 | 3.29e-01 | 91.5% | 56.7% |
| 5063453 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.50 | 38.0 | 2.93e-01 | 92.5% | 34.7% |