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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00293
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00293
Identity
- Kingdom:
- phage
Quality
59.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-88
D2
high
residues 125-222
D3
high
residues 259-368
D4
high
residues 386-489
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5utkA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 38.0 | 4.19e-01 | 100.0% | 69.9% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.66 | 35.0 | 3.75e-01 | 77.9% | 57.6% |
| 4dohB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 40.0 | 4.34e-01 | 99.0% | 75.0% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 37.0 | 4.04e-01 | 99.0% | 69.4% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.63 | 39.0 | 4.70e-01 | 100.0% | 97.0% |
| 7bi2A02 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.63 | 50.0 | 4.66e-01 | 85.6% | 96.2% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.63 | 37.0 | 3.34e-01 | 93.3% | 42.7% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.62 | 36.0 | 4.12e-01 | 81.7% | 78.9% |
| 2xtlA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.61 | 40.0 | 4.08e-01 | 100.0% | 68.7% |
| 6iomB01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.61 | 32.0 | 3.65e-01 | 80.8% | 66.2% |
| 2e3vA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 40.0 | 4.07e-01 | 100.0% | 68.0% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.61 | 36.0 | 3.54e-01 | 100.0% | 53.6% |
| 3waiA02 | 2.60.40.3390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 38.0 | 4.00e-01 | 100.0% | 71.0% |
| 4hscX04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.60 | 37.0 | 3.70e-01 | 100.0% | 59.1% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.59 | 37.0 | 3.65e-01 | 100.0% | 58.6% |
| 3gtyX02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.59 | 42.0 | 4.53e-01 | 92.3% | 91.7% |
| 2grgA01 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.58 | 40.0 | 4.38e-01 | 86.5% | 88.0% |
| 2dbjA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 41.0 | 4.11e-01 | 100.0% | 70.6% |
| 1odhA01 | 2.20.25.670 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain | 0.58 | 36.0 | 4.25e-01 | 92.3% | 91.5% |
| 5jtwA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 44.0 | 4.47e-01 | 99.0% | 81.4% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 40.0 | 4.24e-01 | 100.0% | 81.7% |
| 1f6fB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 38.0 | 3.97e-01 | 100.0% | 73.2% |
| 5j11C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 36.0 | 3.73e-01 | 100.0% | 67.3% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 41.0 | 4.18e-01 | 100.0% | 77.5% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.55 | 40.0 | 4.22e-01 | 100.0% | 84.0% |
| 5chtB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 40.0 | 2.92e-01 | 100.0% | 27.0% |
| 4nn5C02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 34.0 | 3.55e-01 | 100.0% | 67.7% |
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.54 | 48.0 | 2.93e-01 | 98.1% | 90.6% |
| 2fauA02 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 41.0 | 3.80e-01 | 82.7% | 94.2% |
| 4o9gA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 35.0 | 3.14e-01 | 100.0% | 50.0% |
| 7q61A01 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 4.11e-01 | 99.0% | 81.7% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 44.0 | 3.92e-01 | 100.0% | 65.3% |
| 8ornD01 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.52 | 44.0 | 3.76e-01 | 96.2% | 95.5% |
| 1ztuA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 40.0 | 3.54e-01 | 85.6% | 57.0% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 36.0 | 2.62e-01 | 100.0% | 24.4% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 39.0 | 3.59e-01 | 82.7% | 95.1% |
| 1x9tA02 | 3.90.1620.10 | Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 | 0.51 | 39.0 | 2.93e-01 | 81.7% | 43.2% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 40.0 | 2.86e-01 | 100.0% | 27.9% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 37.0 | 2.61e-01 | 100.0% | 23.3% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 35.0 | 3.78e-01 | 100.0% | 85.9% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.51 | 37.0 | 3.56e-01 | 100.0% | 65.6% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 44.0 | 3.44e-01 | 98.1% | 88.7% |
| 3lqmA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.73e-01 | 100.0% | 77.5% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 3.93e-01 | 98.1% | 86.3% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 38.0 | 3.66e-01 | 100.0% | 70.2% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983111 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.76 | 42.0 | 4.89e-01 | 83.7% | 76.0% |
| 3899239 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.69 | 36.0 | 3.90e-01 | 82.7% | 58.9% |
| 5038654 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 39.0 | 4.37e-01 | 82.7% | 72.5% |
| 3515281 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.68 | 44.0 | 4.46e-01 | 100.0% | 64.8% |
| 5011497 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.67 | 42.0 | 3.36e-01 | 100.0% | 33.0% |
| 3345090 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.65 | 38.0 | 3.81e-01 | 83.7% | 56.5% |
| 3965010 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.64 | 36.0 | 3.86e-01 | 80.8% | 63.3% |
| 3556053 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.64 | 42.0 | 4.31e-01 | 100.0% | 70.0% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.63 | 36.0 | 4.15e-01 | 79.8% | 77.3% |
| 3994984 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 38.0 | 4.61e-01 | 80.8% | 95.4% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 37.0 | 3.73e-01 | 81.7% | 57.1% |
| 5000510 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.63 | 36.0 | 4.18e-01 | 81.7% | 78.7% |
| 2527501 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.62 | 37.0 | 3.71e-01 | 81.7% | 57.7% |
| 3874656 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.62 | 44.0 | 3.73e-01 | 100.0% | 46.1% |
| 4527830 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 49.0 | 4.96e-01 | 100.0% | 82.9% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 36.0 | 4.42e-01 | 82.7% | 93.8% |
| 2532980 | 219.1.1.53 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin | 0.62 | 45.0 | 3.39e-01 | 81.7% | 31.1% |
| 2512518 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 36.0 | 3.69e-01 | 82.7% | 59.4% |
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.61 | 36.0 | 4.00e-01 | 82.7% | 72.9% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.61 | 34.0 | 4.37e-01 | 79.8% | 96.7% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.60 | 35.0 | 4.36e-01 | 81.7% | 95.2% |
| 3414005 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 42.0 | 3.80e-01 | 100.0% | 53.6% |
| 3881546 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.59 | 39.0 | 3.98e-01 | 100.0% | 70.0% |
| 4964280 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 40.0 | 4.29e-01 | 100.0% | 83.3% |
| 3347390 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 51.0 | 4.35e-01 | 100.0% | 62.9% |
| 3217546 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.57 | 47.0 | 4.57e-01 | 100.0% | 80.0% |
| 3775483 | 11.1.1.454 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fndc10 | 0.57 | 42.0 | 3.49e-01 | 100.0% | 45.7% |
| 4301927 | 5084.1.1.10 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl | 0.57 | 47.0 | 3.62e-01 | 88.5% | 93.0% |
| 1220396 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 41.0 | 4.08e-01 | 100.0% | 73.1% |
| 3211800 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 44.0 | 4.74e-01 | 100.0% | 95.6% |
| 3280174 | 223.5.1.0 ↗ | a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like | 0.56 | 41.0 | 4.47e-01 | 88.5% | 94.1% |
| 3734638 | 11.1.1.644 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 | 0.56 | 40.0 | 4.10e-01 | 99.0% | 77.0% |
| 4960838 | 11.14.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 | 0.55 | 35.0 | 3.73e-01 | 100.0% | 73.3% |
| 3929943 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 38.0 | 4.09e-01 | 80.8% | 84.4% |
| 3905094 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 44.0 | 4.01e-01 | 100.0% | 65.9% |
| 3790339 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 41.0 | 4.17e-01 | 100.0% | 81.0% |
| 4967007 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 36.0 | 3.97e-01 | 100.0% | 84.7% |
| 4647057 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 4.07e-01 | 100.0% | 78.1% |
| 3182884 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 3.25e-01 | 77.9% | 97.5% |
| 3350520 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.54 | 32.0 | 2.24e-01 | 81.7% | 15.6% |
| 4965619 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 4.09e-01 | 100.0% | 90.6% |
| 3897046 | 11.1.1.239 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG3 | 0.53 | 44.0 | 4.30e-01 | 100.0% | 81.7% |
| 3923857 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 4.08e-01 | 98.1% | 81.9% |
| 4501238 | 207.1.1.37 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › C-JID | 0.52 | 40.0 | 3.05e-01 | 100.0% | 34.7% |
| 3406924 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.99e-01 | 99.0% | 85.6% |
| 872 | 9.9.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 | 0.51 | 39.0 | 3.59e-01 | 82.7% | 95.1% |
| 4542815 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.51 | 41.0 | 3.74e-01 | 87.5% | 64.3% |
| 3260499 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 4.01e-01 | 99.0% | 77.5% |
| 3514371 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.51 | 42.0 | 3.41e-01 | 93.3% | 72.6% |
| 141886 | 11.1.1.137 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tafi-CsgC | 0.51 | 38.0 | 3.93e-01 | 98.1% | 86.3% |
| 3598842 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.50 | 46.0 | 4.05e-01 | 100.0% | 91.3% |