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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00308
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00308
Identity
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 182-275
Domain cluster:
rep: BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00008__D242-335
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3syjA02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.55 | 49.0 | 2.98e-01 | 100.0% | 15.2% |
| 4q66A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 34.0 | 3.50e-01 | 85.1% | 63.0% |
| 1u7zC00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.55 | 38.0 | 2.99e-01 | 72.3% | 69.4% |
| 1w8oA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 3.36e-01 | 84.0% | 64.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4256807 | 207.2.1.10 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin | 0.64 | 53.0 | 4.26e-01 | 91.5% | 58.9% |
| 3544069 | 10.4.1.28 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › PF27640 | 0.55 | 45.0 | 4.15e-01 | 91.5% | 99.2% |
| 3783981 | 2.1.1.59 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1 | 0.53 | 41.0 | 3.74e-01 | 83.0% | 83.2% |
| 4945153 | 10.1.1.21 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd | 0.52 | 45.0 | 3.63e-01 | 98.9% | 68.0% |
| 3164937 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.52 | 45.0 | 3.87e-01 | 100.0% | 66.9% |
| 4049237 | 63.1.1.5 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › ATG27 | 0.51 | 36.0 | 3.19e-01 | 75.5% | 48.0% |
D2
medium
residues 6-78
D3
medium
residues 94-170
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.56 | 39.0 | 3.49e-01 | 72.7% | 69.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3255991 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.68 | 46.0 | 3.03e-01 | 70.1% | 19.4% |
| 3789788 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.58 | 39.0 | 2.47e-01 | 70.1% | 54.7% |
| 3790093 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.53 | 41.0 | 2.49e-01 | 81.8% | 72.9% |