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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00325
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00325
Identity
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-88
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mahA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 40.0 | 4.44e-01 | 93.1% | 72.9% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.68 | 29.0 | 3.09e-01 | 100.0% | 41.2% |
| 2pa8D01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.67 | 42.0 | 4.22e-01 | 89.7% | 62.5% |
| 4m1xD00 | 3.30.1360.240 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.65 | 44.0 | 4.77e-01 | 100.0% | 84.7% |
| 1i3pA00 | 2.60.250.10 | Mainly Beta › Sandwich › Baculovirus p35 › Baculovirus p35 | 0.63 | 45.0 | 3.20e-01 | 92.0% | 24.1% |
| 3mnmA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.61 | 50.0 | 4.65e-01 | 100.0% | 69.6% |
| 1dd5A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.61 | 43.0 | 4.64e-01 | 98.9% | 86.7% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.57 | 48.0 | 4.61e-01 | 98.9% | 81.8% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.56 | 43.0 | 4.14e-01 | 94.3% | 70.9% |
| 1zldA00 | 2.60.40.1920 | Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA | 0.56 | 41.0 | 3.89e-01 | 100.0% | 65.7% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.56 | 40.0 | 3.67e-01 | 93.1% | 57.4% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 39.0 | 3.79e-01 | 95.4% | 65.3% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 39.0 | 3.83e-01 | 92.0% | 68.4% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.55 | 31.0 | 3.39e-01 | 100.0% | 67.1% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.55 | 41.0 | 3.88e-01 | 95.4% | 65.7% |
| 2bjnB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.55 | 45.0 | 3.74e-01 | 100.0% | 52.0% |
| 1vr5A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 31.0 | 2.65e-01 | 92.0% | 33.3% |
| 1azwA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 43.0 | 3.02e-01 | 90.8% | 69.0% |
| 7o0eA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 46.0 | 4.75e-01 | 100.0% | 100.0% |
| 7t28A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 41.0 | 3.07e-01 | 85.1% | 91.9% |
| 3wdhA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 41.0 | 4.16e-01 | 98.9% | 88.1% |
| 2iq1A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 45.0 | 3.31e-01 | 100.0% | 62.3% |
| 3s7iB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 45.0 | 3.58e-01 | 100.0% | 57.3% |
| 5swiD01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 46.0 | 3.33e-01 | 100.0% | 42.6% |
| 2e8yA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 42.0 | 4.23e-01 | 100.0% | 88.9% |
| 3rnsA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 43.0 | 4.17e-01 | 94.3% | 87.0% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 45.0 | 3.53e-01 | 100.0% | 57.6% |
| 2covG00 | 2.60.40.2450 | Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain | 0.50 | 31.0 | 3.19e-01 | 100.0% | 61.4% |
| 4dw8A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.50 | 46.0 | 4.32e-01 | 100.0% | 89.6% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3174419 | 220.1.1.190 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 | 0.74 | 37.0 | 3.22e-01 | 97.7% | 32.8% |
| 4937496 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.71 | 41.0 | 4.66e-01 | 92.0% | 76.9% |
| 5022354 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.66 | 42.0 | 4.47e-01 | 100.0% | 73.3% |
| 3290652 | 306.2.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor | 0.64 | 44.0 | 4.44e-01 | 98.9% | 70.0% |
| 4928493 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.62 | 47.0 | 4.25e-01 | 100.0% | 58.3% |
| 3387224 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.62 | 50.0 | 4.37e-01 | 100.0% | 58.5% |
| 3972904 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.61 | 51.0 | 4.92e-01 | 100.0% | 79.0% |
| 3628199 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.58 | 43.0 | 4.15e-01 | 100.0% | 68.0% |
| 4061807 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.58 | 32.0 | 3.62e-01 | 100.0% | 70.8% |
| 3798234 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 42.0 | 4.08e-01 | 100.0% | 68.0% |
| None | — | 0.57 | 48.0 | 4.66e-01 | 100.0% | 81.0% | |
| 3860875 | 11.1.1.209 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17R_fnIII_D2 | 0.56 | 42.0 | 3.55e-01 | 95.4% | 47.6% |
| 3964535 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.56 | 50.0 | 4.57e-01 | 100.0% | 75.7% |
| 3582491 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 40.0 | 3.35e-01 | 96.6% | 44.0% |
| 5051349 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 49.0 | 4.11e-01 | 100.0% | 64.1% |
| 5064953 | 873.1.1.13 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase | 0.54 | 49.0 | 3.97e-01 | 100.0% | 56.2% |
| 4986440 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.53 | 47.0 | 3.85e-01 | 100.0% | 53.1% |
| 4274443 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.53 | 45.0 | 3.48e-01 | 95.4% | 79.5% |
| 4992592 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.52 | 47.0 | 3.96e-01 | 100.0% | 62.7% |
| 4371213 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 44.0 | 4.25e-01 | 92.0% | 93.0% |
| 3281841 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.52 | 46.0 | 3.64e-01 | 100.0% | 50.8% |
| 3265682 | 10.32.1.255 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF28714 | 0.52 | 47.0 | 3.61e-01 | 100.0% | 84.6% |
| 4622608 | 222.1.1.39 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › CurL-like_PKS_C | 0.51 | 44.0 | 3.15e-01 | 98.9% | 38.2% |
| 3933758 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 45.0 | 3.11e-01 | 100.0% | 29.8% |
| 4989305 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.51 | 45.0 | 4.17e-01 | 100.0% | 76.3% |
| 4933185 | 873.1.1.13 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase | 0.51 | 46.0 | 3.72e-01 | 100.0% | 52.7% |
| 4997815 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.50 | 44.0 | 3.52e-01 | 100.0% | 96.7% |
| 5074091 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.50 | 45.0 | 3.66e-01 | 100.0% | 58.2% |