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term1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00391
Bact-Virterm1_saliva_scaffold_3_curated_closed_complete_prodigal-single.1__X__X__00391
Identity
- Kingdom:
- phage
Quality
91.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-72
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 54.0 | 5.51e-01 | 92.9% | 92.4% |
| 2m9uA00 | 2.30.30.850 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 49.0 | 4.50e-01 | 84.3% | 60.7% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 54.0 | 5.60e-01 | 92.9% | 98.4% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 53.0 | 5.56e-01 | 92.9% | 100.0% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 53.0 | 5.50e-01 | 92.9% | 98.4% |
| 1fuwA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 47.0 | 4.32e-01 | 80.0% | 84.6% |
| 2jngA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 55.0 | 5.39e-01 | 100.0% | 90.9% |
| 2gj3A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 47.0 | 3.98e-01 | 81.4% | 81.5% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 49.0 | 3.96e-01 | 85.7% | 98.5% |
| 3rfoA02 | 3.10.25.10 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain | 0.61 | 50.0 | 4.40e-01 | 91.4% | 93.3% |
| 3tqqA02 | 3.10.25.10 | Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain | 0.61 | 49.0 | 4.33e-01 | 90.0% | 93.4% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 41.0 | 3.76e-01 | 84.3% | 53.8% |
| 3tvjB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 46.0 | 4.02e-01 | 84.3% | 77.6% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 50.0 | 4.34e-01 | 92.9% | 62.0% |
| 1u04A02 | 3.90.70.180 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 48.0 | 4.21e-01 | 95.7% | 97.3% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.58 | 42.0 | 3.35e-01 | 78.6% | 55.9% |
| 3mj6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 4.07e-01 | 91.4% | 91.1% |
| 3vsfC01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 43.0 | 2.81e-01 | 82.9% | 27.5% |
| 4ld6A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 44.0 | 3.89e-01 | 90.0% | 60.7% |
| 3moiA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 47.0 | 3.43e-01 | 92.9% | 69.9% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.57 | 46.0 | 3.65e-01 | 92.9% | 84.3% |
| 4gq1A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 42.0 | 2.79e-01 | 82.9% | 23.1% |
| 2ichA02 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.56 | 42.0 | 3.58e-01 | 85.7% | 91.5% |
| 3e9mB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 48.0 | 3.53e-01 | 100.0% | 73.2% |
| 3sigA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.53 | 44.0 | 3.04e-01 | 95.7% | 58.5% |
| 3eliA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 43.0 | 3.52e-01 | 94.3% | 86.8% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.27e-01 | 82.9% | 90.9% |
| 2rsxA00 | 3.10.450.420 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 40.0 | 3.16e-01 | 87.1% | 91.8% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 41.0 | 3.28e-01 | 91.4% | 83.2% |
| 3bhcA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.50 | 35.0 | 2.98e-01 | 88.6% | 41.5% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3934278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 60.0 | 5.07e-01 | 95.7% | 65.2% |
| 3700747 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 53.0 | 4.92e-01 | 84.3% | 96.7% |
| 3275758 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.67 | 53.0 | 3.13e-01 | 84.3% | 17.2% |
| 5053021 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.67 | 52.0 | 4.84e-01 | 85.7% | 82.2% |
| 3648779 | 4111.1.1.2 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC | 0.65 | 56.0 | 4.56e-01 | 97.1% | 68.1% |
| 5076916 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.65 | 51.0 | 4.19e-01 | 87.1% | 83.6% |
| 3931055 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.65 | 59.0 | 5.79e-01 | 100.0% | 97.3% |
| 2157301 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.64 | 54.0 | 5.36e-01 | 91.4% | 91.8% |
| 4959178 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.64 | 51.0 | 4.28e-01 | 87.1% | 85.8% |
| None | — | 0.64 | 47.0 | 3.44e-01 | 91.4% | 28.2% | |
| 5022323 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 46.0 | 4.72e-01 | 75.7% | 96.9% |
| 3970459 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.63 | 50.0 | 5.23e-01 | 100.0% | 95.3% |
| 3557649 | 4.8.1.20 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N | 0.62 | 50.0 | 4.33e-01 | 87.1% | 57.1% |
| 3611291 | 4.18.1.0 ↗ | beta barrels › SH3 › Plus3 › Plus3 | 0.62 | 54.0 | 4.21e-01 | 97.1% | 81.3% |
| 3967986 | 4.7.1.2 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF | 0.62 | 50.0 | 4.85e-01 | 91.4% | 95.0% |
| 3265666 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 46.0 | 2.73e-01 | 81.4% | 23.1% |
| 4587404 | 222.2.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase | 0.61 | 46.0 | 4.18e-01 | 84.3% | 91.0% |
| 4508593 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.60 | 49.0 | 4.27e-01 | 92.9% | 91.3% |
| 3572423 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.60 | 48.0 | 4.16e-01 | 94.3% | 58.3% |
| 145843 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.59 | 50.0 | 4.34e-01 | 92.9% | 62.0% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.58 | 46.0 | 4.61e-01 | 92.9% | 90.7% |
| 3399965 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 47.0 | 4.38e-01 | 92.9% | 71.1% |
| 3959244 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.57 | 42.0 | 3.94e-01 | 80.0% | 81.1% |
| 3750522 | 4.1.1.218 ↗ | beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N | 0.56 | 40.0 | 3.55e-01 | 81.4% | 50.0% |
| 4611214 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.56 | 46.0 | 4.05e-01 | 95.7% | 93.6% |
| 3219409 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 46.0 | 4.27e-01 | 92.9% | 92.2% |
| 3934686 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 44.0 | 4.01e-01 | 87.1% | 100.0% |
| 4953226 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 35.0 | 3.59e-01 | 80.0% | 67.7% |
| 3347865 | 220.1.1.78 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 | 0.55 | 43.0 | 3.71e-01 | 88.6% | 72.5% |
| 3626173 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 43.0 | 2.79e-01 | 85.7% | 23.1% |
| 4189243 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.54 | 41.0 | 3.40e-01 | 81.4% | 54.6% |
| 3751411 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.54 | 39.0 | 3.62e-01 | 75.7% | 70.0% |
| 3997130 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 45.0 | 4.04e-01 | 94.3% | 90.0% |
| 3608292 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.54 | 45.0 | 4.39e-01 | 98.6% | 96.2% |
| 3645842 | 4.1.1.162 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF502 | 0.53 | 38.0 | 3.73e-01 | 80.0% | 76.2% |
| 5060660 | 3629.1.1.0 ↗ | beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain | 0.53 | 42.0 | 3.57e-01 | 88.6% | 69.2% |
| 3988073 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 35.0 | 2.76e-01 | 70.0% | 52.9% |
| 4959532 | 331.10.2.1 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc | 0.52 | 43.0 | 3.80e-01 | 100.0% | 79.1% |
| 4988848 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 38.0 | 3.97e-01 | 85.7% | 87.7% |
| 3474075 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 36.0 | 3.62e-01 | 80.0% | 86.5% |
D2
medium
residues 75-117
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4q34A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 44.0 | 2.72e-01 | 97.7% | 45.2% |
| 3mekA03 | 1.10.220.160 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.54 | 45.0 | 3.66e-01 | 95.3% | 90.7% |