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term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00070
Bact-Virterm1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00070
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 47-105
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mzbA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 48.0 | 4.29e-01 | 76.3% | 48.8% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.65 | 43.0 | 4.21e-01 | 100.0% | 63.1% |
| 1vw4L02 | 1.10.246.170 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.61 | 43.0 | 3.83e-01 | 74.6% | 65.9% |
| 1zq9A02 | 1.10.8.480 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 49.0 | 4.23e-01 | 94.9% | 91.8% |
| 1l3eB00 | 1.20.1020.10 | Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain | 0.56 | 44.0 | 3.76e-01 | 100.0% | 51.5% |
| 2p0tA01 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.56 | 44.0 | 4.12e-01 | 93.2% | 69.7% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 45.0 | 4.05e-01 | 100.0% | 95.5% |
| 3afhA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.54 | 35.0 | 3.75e-01 | 94.9% | 80.0% |
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.53 | 43.0 | 3.55e-01 | 94.9% | 63.1% |
| 2ymmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 38.0 | 3.63e-01 | 83.1% | 78.1% |
| 3ooqA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.50 | 43.0 | 2.77e-01 | 98.3% | 57.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3328225 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.69 | 43.0 | 4.57e-01 | 96.6% | 71.7% |
| 3935836 | 103.11.1.0 ↗ | alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related | 0.67 | 45.0 | 4.57e-01 | 71.2% | 96.7% |
| 3408255 | 101.1.1.112 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg | 0.61 | 45.0 | 3.55e-01 | 79.7% | 72.0% |
| 4013953 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.61 | 48.0 | 4.38e-01 | 93.2% | 95.3% |
| 4028933 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 37.0 | 3.48e-01 | 89.8% | 58.6% |
| 3664814 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.54 | 47.0 | 3.32e-01 | 100.0% | 33.3% |
| 4968187 | 101.1.2.619 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_33 | 0.50 | 34.0 | 3.38e-01 | 96.6% | 66.2% |