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term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00111
Bact-Virterm1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00111
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-126
Domain cluster:
rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_100001521__D4-131
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06868.17 best | DUF1257 | 43.4 | 4.90e-11 | 82.9% | 99.0% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iwcB00 | 3.30.360.110 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase domain | 0.66 | 26.0 | 3.72e-01 | 95.9% | 75.4% |
| 1k8kF00 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.63 | 44.0 | 3.97e-01 | 85.4% | 53.3% |
| 4p47A00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.63 | 45.0 | 3.32e-01 | 74.8% | 79.1% |
| 3u65A00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.62 | 46.0 | 3.40e-01 | 76.4% | 81.2% |
| 4rl1A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.62 | 32.0 | 4.03e-01 | 72.4% | 84.5% |
| 4rr5A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.62 | 29.0 | 3.86e-01 | 72.4% | 84.4% |
| 2x8xX02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 28.0 | 3.50e-01 | 95.1% | 69.7% |
| 4n6kA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.61 | 44.0 | 3.30e-01 | 75.6% | 80.4% |
| 3up9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 43.0 | 4.15e-01 | 73.2% | 88.4% |
| 2hzlB01 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.60 | 43.0 | 3.59e-01 | 74.8% | 77.5% |
| 2z0fA01 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.59 | 45.0 | 3.81e-01 | 78.9% | 70.5% |
| 3g87A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.59 | 31.0 | 3.87e-01 | 80.5% | 88.1% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 32.0 | 3.75e-01 | 76.4% | 77.8% |
| 2ckfC01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.58 | 47.0 | 3.55e-01 | 86.2% | 58.9% |
| 2mzwA01 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.58 | 33.0 | 4.00e-01 | 75.6% | 88.2% |
| 1xmcB03 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.58 | 47.0 | 4.13e-01 | 85.4% | 100.0% |
| 1uliA01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.58 | 47.0 | 3.54e-01 | 86.2% | 63.0% |
| 2cxiA03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.58 | 31.0 | 3.97e-01 | 94.3% | 91.4% |
| 3ix1A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 41.0 | 3.52e-01 | 74.0% | 56.6% |
| 1wg1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 31.0 | 3.84e-01 | 78.0% | 88.7% |
| 4mhfA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.57 | 41.0 | 3.14e-01 | 74.8% | 83.7% |
| 2ebbA00 | 3.30.1360.20 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase | 0.57 | 34.0 | 3.83e-01 | 78.0% | 77.1% |
| 5ja2A01 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.56 | 49.0 | 3.86e-01 | 95.1% | 81.2% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 43.0 | 4.27e-01 | 81.3% | 98.5% |
| 2m47A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 44.0 | 4.06e-01 | 85.4% | 96.3% |
| 4xeqB00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.55 | 40.0 | 3.03e-01 | 74.8% | 82.6% |
| 4ecfA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 38.0 | 3.73e-01 | 71.5% | 77.5% |
| 3oxnA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 37.0 | 3.86e-01 | 71.5% | 87.8% |
| 1vwxH02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.53 | 35.0 | 3.83e-01 | 97.6% | 80.6% |
| 1x9mA03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 43.0 | 3.76e-01 | 85.4% | 64.6% |
| 4obuA01 | 3.90.1150.170 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.52 | 42.0 | 3.33e-01 | 83.7% | 45.3% |
| 3l4gB03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.51 | 31.0 | 3.76e-01 | 97.6% | 100.0% |
| 3oovA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 37.0 | 3.36e-01 | 74.0% | 91.5% |
| 5efrA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.51 | 28.0 | 3.44e-01 | 75.6% | 89.0% |
| 3u2rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.59e-01 | 75.6% | 83.0% |
| 3nhqC03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.50 | 35.0 | 3.32e-01 | 70.7% | 81.8% |
| 4r70B01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 36.0 | 3.10e-01 | 74.8% | 70.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942500 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 31.0 | 4.24e-01 | 74.8% | 100.0% |
| 4975787 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.62 | 37.0 | 3.43e-01 | 85.4% | 45.6% |
| 4072180 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.60 | 31.0 | 3.44e-01 | 73.2% | 61.0% |
| 4037873 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.60 | 31.0 | 3.42e-01 | 73.2% | 61.0% |
| 4624761 | 323.1.1.9 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C | 0.59 | 47.0 | 3.70e-01 | 85.4% | 85.1% |
| 3942221 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 32.0 | 3.85e-01 | 76.4% | 84.0% |
| 4006107 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.58 | 32.0 | 3.85e-01 | 76.4% | 84.0% |
| 4973866 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.57 | 32.0 | 3.81e-01 | 77.2% | 80.0% |
| 3628751 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.56 | 43.0 | 3.80e-01 | 81.3% | 55.7% |
| 3702849 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.56 | 38.0 | 4.06e-01 | 78.0% | 80.0% |
| 4975301 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.56 | 32.0 | 3.91e-01 | 76.4% | 89.3% |
| 4200716 | 7523.1.1.16 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP | 0.56 | 40.0 | 3.05e-01 | 74.8% | 83.2% |
| 3953697 | 305.2.1.1 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a | 0.55 | 34.0 | 3.81e-01 | 77.2% | 78.9% |
| 4932337 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.55 | 32.0 | 3.78e-01 | 77.2% | 82.4% |
| 3684127 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.54 | 34.0 | 3.91e-01 | 78.0% | 89.4% |
| 3555420 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.54 | 39.0 | 2.78e-01 | 74.0% | 40.3% |
| 3296454 | 331.1.1.20 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AAA_assoc | 0.54 | 41.0 | 4.22e-01 | 79.7% | 100.0% |
| 3684518 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.54 | 40.0 | 4.17e-01 | 78.9% | 100.0% |
| 4570660 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 37.0 | 3.57e-01 | 72.4% | 88.3% |
| 3792790 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.52 | 34.0 | 3.82e-01 | 98.4% | 88.9% |
| 3183515 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 42.0 | 4.00e-01 | 85.4% | 75.9% |
| 4302478 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.52 | 33.0 | 3.74e-01 | 98.4% | 86.7% |
| 4118361 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.52 | 33.0 | 3.81e-01 | 98.4% | 90.6% |
| 3690405 | 101.1.9.5 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 | 0.51 | 33.0 | 3.69e-01 | 98.4% | 87.8% |
| 2817 | 101.1.9.2 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 | 0.50 | 38.0 | 4.14e-01 | 86.2% | 95.2% |