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term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00127
Bact-Virterm1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00127
Identity
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 107-184
Domain cluster:
rep: IMGVR_UViG_3300025715_000776-3300025715-Ga0209310_10090992__D645-715_813-826
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00521.27 best | DNA_topoisoIV | 44.4 | 1.60e-11 | 100.0% | 16.0% |
D2
medium
residues 17-93
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00521.27 best | DNA_topoisoIV | 98.1 | 8.00e-28 | 98.7% | 17.6% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xcqA02 | 3.90.199.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 | 0.93 | 89.0 | 5.83e-01 | 100.0% | 28.4% |
| 3jamK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 42.0 | 3.89e-01 | 79.2% | 58.3% |
| 3d68A01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.52 | 35.0 | 3.36e-01 | 88.3% | 57.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4969077 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.96 | 92.0 | 7.08e-01 | 100.0% | 51.3% |
| 4096086 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.95 | 66.0 | 5.81e-01 | 71.4% | 53.3% |
| 4370976 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.95 | 89.0 | 6.81e-01 | 100.0% | 49.0% |
| 4865162 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.94 | 89.0 | 7.25e-01 | 100.0% | 58.8% |
| 4946211 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.92 | 86.0 | 6.67e-01 | 98.7% | 50.7% |
| 2754385 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.92 | 86.0 | 6.58e-01 | 100.0% | 48.8% |
| 4024262 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.90 | 85.0 | 6.53e-01 | 100.0% | 49.7% |
| 3594651 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.84 | 78.0 | 6.44e-01 | 100.0% | 61.5% |
| 4887989 | 101.1.2.9 ↗ | alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV | 0.82 | 73.0 | 5.50e-01 | 100.0% | 42.5% |
| 4833001 | 101.1.2.47 ↗ | alpha arrays › HTH › HTH › winged helix domain › S10_plectin | 0.65 | 40.0 | 4.62e-01 | 79.2% | 87.3% |
| 3236247 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.55 | 38.0 | 3.54e-01 | 85.7% | 56.0% |
| 3227356 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.53 | 36.0 | 2.68e-01 | 72.7% | 84.2% |
| 4024667 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.50 | 34.0 | 3.76e-01 | 70.1% | 96.7% |