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term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00137
Bact-Virterm1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00137
Identity
- Kingdom:
- phage
Quality
67.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 87-148
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zm5A02 | 1.10.20.140 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.72 | 56.0 | 5.33e-01 | 82.3% | 80.6% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.64 | 54.0 | 4.92e-01 | 100.0% | 75.3% |
| 3i5tB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 53.0 | 4.03e-01 | 98.4% | 55.5% |
| 6ifsB02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.63 | 49.0 | 4.72e-01 | 87.1% | 95.8% |
| 4huqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 50.0 | 3.31e-01 | 90.3% | 24.6% |
| 2jvwA01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.62 | 48.0 | 4.92e-01 | 87.1% | 98.3% |
| 4gc5A02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.61 | 48.0 | 4.30e-01 | 88.7% | 76.7% |
| 5jszA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 48.0 | 3.24e-01 | 91.9% | 25.4% |
| 3mabA00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 39.0 | 3.52e-01 | 75.8% | 47.1% |
| 5gkoA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 49.0 | 3.34e-01 | 91.9% | 26.7% |
| 3gruA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.60 | 48.0 | 4.36e-01 | 88.7% | 89.5% |
| 1a62A01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.59 | 38.0 | 4.13e-01 | 91.9% | 89.1% |
| 1zq9A02 | 1.10.8.480 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 46.0 | 4.04e-01 | 88.7% | 92.9% |
| 1i4wA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.58 | 46.0 | 4.39e-01 | 90.3% | 93.3% |
| 3gfoA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 3.12e-01 | 91.9% | 28.3% |
| 1nlwD00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.57 | 39.0 | 3.71e-01 | 100.0% | 58.4% |
| 2awnC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.29e-01 | 93.5% | 33.7% |
| 3mvcB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 44.0 | 3.46e-01 | 91.9% | 78.6% |
| 3qavA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 38.0 | 2.96e-01 | 71.0% | 44.3% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.56 | 38.0 | 3.96e-01 | 72.6% | 98.2% |
| 3tuiD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 45.0 | 3.11e-01 | 91.9% | 29.7% |
| 1khcA02 | 1.10.720.50 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain | 0.54 | 38.0 | 3.75e-01 | 75.8% | 97.1% |
| 1tdpA00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.53 | 44.0 | 3.70e-01 | 96.8% | 54.1% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 43.0 | 4.04e-01 | 95.2% | 71.6% |
| 2r8wA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 43.0 | 2.80e-01 | 91.9% | 21.9% |
| 3cnhB02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 32.0 | 3.19e-01 | 77.4% | 54.4% |
| 2nwhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 38.0 | 2.42e-01 | 77.4% | 78.8% |
| 4g1uD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 43.0 | 2.97e-01 | 100.0% | 40.5% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.52 | 44.0 | 4.03e-01 | 100.0% | 80.0% |
| 3gzfD00 | 1.10.150.420 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus | 0.51 | 38.0 | 3.40e-01 | 80.6% | 72.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2100896 | 1180.1.1.1 ↗ | alpha bundles › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › FliP | 0.62 | 52.0 | 5.12e-01 | 100.0% | 92.5% |
| 3738441 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.62 | 51.0 | 3.46e-01 | 93.5% | 29.2% |
| 4994458 | 632.12.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 | 0.60 | 50.0 | 4.64e-01 | 93.5% | 77.5% |
| 4286039 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.59 | 43.0 | 3.96e-01 | 82.3% | 94.4% |
| 5065357 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.59 | 46.0 | 4.42e-01 | 88.7% | 94.7% |
| 3366160 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.58 | 46.0 | 3.94e-01 | 88.7% | 93.3% |
| 4989573 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.58 | 46.0 | 3.23e-01 | 91.9% | 31.6% |
| 4993069 | 632.12.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 | 0.58 | 47.0 | 4.77e-01 | 98.4% | 95.2% |
| 3229732 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.57 | 36.0 | 3.16e-01 | 74.2% | 40.0% |
| 3284564 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.56 | 38.0 | 3.07e-01 | 72.6% | 51.5% |
| 3195421 | 105.1.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain | 0.56 | 39.0 | 3.60e-01 | 100.0% | 56.0% |
| 3786420 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.55 | 43.0 | 3.69e-01 | 87.1% | 98.1% |
| 4171259 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.52 | 43.0 | 3.25e-01 | 93.5% | 51.2% |
| 5003101 | 4033.1.1.0 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like | 0.51 | 41.0 | 3.89e-01 | 95.2% | 95.0% |