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term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00141

Bact-Vir

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00141

Identity

Kingdom:
phage

Quality

83.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-127
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 29.0 3.71e-01 87.0% 81.8%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 32.0 3.67e-01 91.1% 71.4%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 35.0 4.20e-01 91.1% 94.9%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 33.0 3.50e-01 92.7% 63.8%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 31.0 3.90e-01 82.1% 94.1%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.56 26.0 3.63e-01 72.4% 96.4%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.56 32.0 3.80e-01 87.0% 88.2%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 3.97e-01 90.2% 78.7%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 37.0 3.75e-01 72.4% 72.3%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.54 29.0 3.67e-01 90.2% 95.5%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 32.0 3.73e-01 90.2% 85.9%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 33.0 3.96e-01 93.5% 97.5%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 30.0 3.83e-01 91.1% 95.9%
6lpnA04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 4.17e-01 96.7% 97.9%
4c8yA01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 4.11e-01 89.4% 91.4%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 27.0 3.27e-01 77.2% 78.7%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 34.0 3.80e-01 87.0% 88.0%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 36.0 3.80e-01 91.1% 78.9%
4p6qA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 32.0 3.79e-01 90.2% 96.2%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.52 35.0 4.01e-01 94.3% 96.7%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 32.0 3.51e-01 85.4% 79.8%
3wx4A00 3.30.70.2770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 35.0 3.86e-01 72.4% 93.9%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 35.0 3.72e-01 94.3% 81.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027566 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 34.0 4.03e-01 90.2% 78.8%
4954770 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 35.0 3.02e-01 97.6% 36.4%
5011613 101.1.2.225 ↗ alpha arrays › HTH › HTH › winged helix domain › F-93_WHD 0.59 33.0 3.65e-01 94.3% 68.4%
5025451 101.1.2.143 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.59 32.0 3.44e-01 91.1% 59.1%
5076142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 33.0 3.70e-01 95.1% 70.5%
4928075 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 31.0 3.70e-01 91.1% 78.8%
5044327 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 31.0 3.42e-01 94.3% 66.0%
4983426 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 28.0 3.34e-01 93.5% 71.2%
4926994 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.55 33.0 3.54e-01 95.1% 68.3%
3948181 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.55 29.0 3.64e-01 79.7% 83.8%
4066007 304.11.1.2 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT 0.55 31.0 3.87e-01 89.4% 92.0%
4961487 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 34.0 3.57e-01 82.1% 68.7%
3653902 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.52 33.0 2.82e-01 88.6% 36.7%
3926000 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.52 46.0 3.31e-01 97.6% 73.9%
4956754 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.51 33.0 3.70e-01 92.7% 86.3%
5035849 3501.1.1.0 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.51 32.0 3.87e-01 85.4% 100.0%
3956508 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.50 33.0 3.81e-01 92.7% 100.0%
4965147 5001.1.1.292 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM 0.50 40.0 3.25e-01 85.4% 82.1%