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term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00176

Bact-Vir

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00176

Identity

Kingdom:
phage

Quality

71.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-96
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1whrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.72 52.0 4.68e-01 92.0% 54.0%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.72 49.0 5.40e-01 84.1% 88.6%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.72 49.0 5.35e-01 83.0% 86.3%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.71 57.0 6.09e-01 88.6% 98.7%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.66 47.0 4.67e-01 86.4% 71.3%
3zigA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.66 45.0 4.64e-01 81.8% 75.6%
4lecA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 46.0 3.51e-01 83.0% 31.7%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 45.0 3.71e-01 87.5% 38.9%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.63 46.0 5.06e-01 86.4% 97.1%
2nxcA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 41.0 3.47e-01 84.1% 39.9%
3afgB01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.60 39.0 3.99e-01 75.0% 67.8%
5hb5B00 3.30.1610.10 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Peptidase S59, nucleoporin 0.59 40.0 3.49e-01 70.5% 50.7%
1nkvB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 41.0 3.09e-01 72.7% 54.1%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 45.0 3.20e-01 86.4% 32.1%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.55e-01 88.6% 95.8%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.79e-01 87.5% 56.1%
4qpkB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 39.0 3.44e-01 70.5% 94.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.74e-01 85.2% 56.7%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.75e-01 80.7% 61.8%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 4.31e-01 79.5% 98.4%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.56 39.0 4.25e-01 76.1% 88.7%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 44.0 3.90e-01 85.2% 78.0%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 43.0 3.05e-01 85.2% 63.5%
3l4gC03 1.10.10.2330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 33.0 3.94e-01 81.8% 98.1%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 49.0 4.25e-01 98.9% 80.9%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 4.22e-01 83.0% 98.4%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 3.66e-01 85.2% 63.3%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.54 36.0 3.66e-01 73.9% 68.6%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 4.06e-01 81.8% 87.0%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.83e-01 85.2% 76.5%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 41.0 3.89e-01 89.8% 70.5%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.90e-01 87.5% 78.2%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.52 43.0 3.85e-01 93.2% 87.0%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.97e-01 80.7% 85.9%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.81e-01 84.1% 71.7%
4r3aA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 40.0 3.49e-01 84.1% 93.0%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.43e-01 79.5% 61.4%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.08e-01 75.0% 44.0%
4ig1A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.52 44.0 3.04e-01 96.6% 77.4%
7ovuA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 3.09e-01 81.8% 76.2%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.45e-01 90.9% 57.1%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 40.0 3.76e-01 86.4% 73.9%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.83e-01 100.0% 74.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.25e-01 90.9% 47.7%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.48e-01 90.9% 56.2%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218484 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.81 60.0 6.60e-01 95.5% 97.1%
3992039 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.80 63.0 6.21e-01 95.5% 78.7%
3395627 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.76 59.0 6.34e-01 100.0% 97.3%
3403645 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.76 48.0 5.65e-01 80.7% 95.0%
3407611 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.76 54.0 5.77e-01 86.4% 86.7%
4014318 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.75 53.0 5.46e-01 89.8% 76.5%
5055166 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.75 50.0 5.58e-01 83.0% 87.1%
3698585 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.75 50.0 5.20e-01 81.8% 75.0%
3357806 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.74 51.0 5.75e-01 84.1% 95.4%
3578925 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.74 58.0 5.51e-01 89.8% 70.5%
3552466 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.74 53.0 5.79e-01 88.6% 92.9%
3581967 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.74 51.0 5.76e-01 86.4% 96.9%
3226102 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.74 58.0 5.40e-01 90.9% 68.5%
3264940 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 64.0 5.67e-01 92.0% 78.3%
3276975 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.73 45.0 3.90e-01 100.0% 40.0%
4983717 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.73 41.0 3.38e-01 94.3% 31.6%
4019210 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 52.0 5.75e-01 87.5% 94.3%
3595328 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 52.0 4.92e-01 92.0% 62.9%
3820397 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 53.0 5.20e-01 93.2% 71.6%
3737985 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 52.0 4.98e-01 89.8% 66.0%
4966161 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 55.0 5.92e-01 89.8% 98.6%
4228350 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 50.0 5.64e-01 86.4% 98.5%
153276 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 49.0 5.40e-01 84.1% 88.6%
3871908 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.71 55.0 5.09e-01 90.9% 64.6%
3740540 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 53.0 5.50e-01 88.6% 85.0%
3743748 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 49.0 4.88e-01 83.0% 68.9%
4387157 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.71 47.0 4.90e-01 73.9% 73.8%
3395407 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.71 47.0 4.78e-01 80.7% 69.4%
3543869 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.71 48.0 4.75e-01 83.0% 65.3%
3211159 328.7.1.1 a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.71 57.0 5.21e-01 86.4% 85.2%
3461462 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.70 52.0 5.47e-01 83.0% 86.3%
3792160 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.69 54.0 5.01e-01 83.0% 68.8%
3182652 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.68 54.0 5.68e-01 88.6% 95.0%
3190610 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.65 53.0 4.94e-01 88.6% 73.6%
3186329 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 53.0 4.79e-01 93.2% 74.2%
3271317 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.62 51.0 4.98e-01 100.0% 83.2%
4933792 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.61 44.0 4.63e-01 81.8% 83.7%
5016955 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 4.57e-01 95.5% 70.0%
3741097 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.59 40.0 4.41e-01 78.4% 93.8%
56460 150.1.2.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase 0.59 49.0 3.03e-01 89.8% 73.1%
3598643 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 4.44e-01 83.0% 91.4%
3728313 101.1.2.164 alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 0.58 39.0 4.29e-01 78.4% 93.8%
3562051 101.1.2.29 alpha arrays › HTH › HTH › winged helix domain › PTS_2-RNA 0.58 48.0 4.57e-01 90.9% 78.1%
3967479 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 46.0 3.78e-01 93.2% 77.8%
5039588 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.57 40.0 4.37e-01 79.5% 91.4%
3227729 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.57 44.0 4.18e-01 84.1% 72.4%
4987785 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.57 38.0 4.31e-01 78.4% 93.8%
4335496 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.56 43.0 3.71e-01 80.7% 64.9%
5063200 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 40.0 4.10e-01 84.1% 78.8%
5042101 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.56 37.0 4.09e-01 77.3% 85.7%
4267547 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.54 40.0 3.48e-01 78.4% 63.6%
3965082 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.54 40.0 3.54e-01 78.4% 68.5%
5026329 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 35.0 3.99e-01 75.0% 98.3%
4032061 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.53 40.0 3.61e-01 80.7% 68.8%
4960260 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.53 36.0 4.01e-01 79.5% 90.0%
3290340 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.52 38.0 3.29e-01 75.0% 87.1%
4432855 132.1.1.1 alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.52 34.0 3.62e-01 80.7% 75.0%