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term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00201

Bact-Vir

term1_saliva_scaffold_5_curated_closed_gap_prodigal-single.1__X__X__00201

Identity

Kingdom:
phage

Quality

80.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-191
PDB
Domain cluster: representative
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3623207 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.76 45.0 5.74e-01 90.9% 96.5%
3924672 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.71 45.0 5.50e-01 91.4% 96.8%
3220214 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.69 44.0 5.35e-01 89.8% 96.0%
D2 high residues 295-426
PDB
Domain cluster: rep: AP008983.1__BAE47877.1__CST179__00179__D460-558
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfA03 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.76 57.0 6.46e-01 98.5% 100.0%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 33.0 4.52e-01 88.6% 100.0%
1ynjD04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.60 57.0 5.48e-01 99.2% 100.0%
2g5dA01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.56 40.0 3.46e-01 88.6% 48.3%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.53 33.0 3.60e-01 88.6% 75.7%
2qltA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 25.0 3.39e-01 79.5% 96.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3665832 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.82 66.0 7.20e-01 95.5% 99.1%
3696793 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.76 64.0 6.89e-01 96.2% 100.0%
3966248 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.75 58.0 6.19e-01 100.0% 91.3%
3187087 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.73 66.0 6.83e-01 97.0% 100.0%
3670775 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.73 58.0 6.14e-01 100.0% 91.7%
3274137 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.72 64.0 6.58e-01 99.2% 98.4%
3357414 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.70 66.0 6.67e-01 98.5% 99.2%
3183266 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.70 66.0 6.71e-01 100.0% 100.0%
3643011 1.1.2.11 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP 0.69 64.0 6.53e-01 97.7% 100.0%
5038954 1.1.2.47 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › PF27352 0.68 55.0 5.86e-01 91.7% 96.5%
3374701 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.63 59.0 5.26e-01 100.0% 90.6%
3509068 1.1.2.2 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 0.62 59.0 5.02e-01 100.0% 91.0%
3781177 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 48.0 5.08e-01 93.9% 96.5%
3515104 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 27.0 3.09e-01 84.1% 55.6%
D3 medium residues 214-289
PDB