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term1_stool_scaffold_19_prodigal-single.1__X__X__00111
Bact-Virterm1_stool_scaffold_19_prodigal-single.1__X__X__00111
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-96
Domain cluster:
representative
CATH (55)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ulpD00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.85 | 72.0 | 6.62e-01 | 90.0% | 94.7% |
| 1v1qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.84 | 73.0 | 6.74e-01 | 91.1% | 90.0% |
| 1nnxA00 | 2.40.50.200 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold | 0.84 | 70.0 | 6.99e-01 | 100.0% | 84.9% |
| 8aasC01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.84 | 65.0 | 6.24e-01 | 100.0% | 71.6% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.83 | 72.0 | 6.81e-01 | 91.1% | 89.4% |
| 5zg8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.83 | 78.0 | 7.49e-01 | 100.0% | 88.2% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.83 | 70.0 | 6.75e-01 | 90.0% | 94.1% |
| 3kojB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.83 | 72.0 | 7.24e-01 | 91.1% | 96.7% |
| 2vw9B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.82 | 70.0 | 6.66e-01 | 91.1% | 100.0% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.81 | 76.0 | 6.88e-01 | 100.0% | 81.9% |
| 4damC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.81 | 69.0 | 6.70e-01 | 91.1% | 92.0% |
| 3kf6A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 74.0 | 6.39e-01 | 100.0% | 73.5% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 73.0 | 6.76e-01 | 100.0% | 86.8% |
| 3f2bA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 74.0 | 7.22e-01 | 100.0% | 95.8% |
| 3nemA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 74.0 | 6.97e-01 | 100.0% | 86.7% |
| 1gm5A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 71.0 | 6.80e-01 | 100.0% | 85.3% |
| 3f1zI00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 73.0 | 6.66e-01 | 100.0% | 87.1% |
| 6lbrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 74.0 | 5.59e-01 | 100.0% | 65.0% |
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 67.0 | 6.27e-01 | 92.2% | 81.7% |
| 4glaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 67.0 | 6.74e-01 | 91.1% | 94.4% |
| 4gnxB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 73.0 | 6.52e-01 | 100.0% | 75.4% |
| 3amuA02 | 2.40.50.1010 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.78 | 67.0 | 5.79e-01 | 100.0% | 61.8% |
| 2k5vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 70.0 | 6.83e-01 | 100.0% | 89.8% |
| 1cukA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 54.0 | 6.15e-01 | 91.1% | 98.5% |
| 4pofA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 72.0 | 6.83e-01 | 100.0% | 94.2% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 65.0 | 6.51e-01 | 90.0% | 96.7% |
| 3m4pA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 71.0 | 6.56e-01 | 100.0% | 85.7% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 70.0 | 6.21e-01 | 100.0% | 94.5% |
| 2pi2D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 71.0 | 6.29e-01 | 100.0% | 72.4% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 41.0 | 4.88e-01 | 87.8% | 77.8% |
| 3q8dA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.75 | 58.0 | 6.18e-01 | 87.8% | 94.8% |
| 6ro0D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.75 | 64.0 | 5.98e-01 | 92.2% | 92.7% |
| 4me3A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.75 | 69.0 | 6.74e-01 | 100.0% | 94.8% |
| 6ro0F00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.74 | 61.0 | 5.97e-01 | 90.0% | 91.8% |
| 1kxlA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 67.0 | 5.25e-01 | 100.0% | 69.5% |
| 4joiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 67.0 | 5.73e-01 | 100.0% | 75.2% |
| 3nwsA01 | 2.40.50.800 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.72 | 65.0 | 5.61e-01 | 100.0% | 86.5% |
| 3rmhB00 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.71 | 64.0 | 5.62e-01 | 100.0% | 85.0% |
| 2lssA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 52.0 | 5.73e-01 | 88.9% | 100.0% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 56.0 | 5.66e-01 | 90.0% | 100.0% |
| 3mxnB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 63.0 | 5.52e-01 | 100.0% | 74.8% |
| 3rr1A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 44.0 | 3.86e-01 | 70.0% | 81.0% |
| 2q2tA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 52.0 | 4.94e-01 | 90.0% | 100.0% |
| 1dgsA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 47.0 | 5.14e-01 | 85.6% | 100.0% |
| 2ja9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 49.0 | 5.14e-01 | 86.7% | 97.6% |
| 1h6hA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 48.0 | 4.13e-01 | 87.8% | 87.4% |
| 6ipaA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 47.0 | 3.94e-01 | 88.9% | 53.3% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 35.0 | 3.95e-01 | 80.0% | 82.1% |
| 2og9A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 39.0 | 3.51e-01 | 75.6% | 84.6% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 42.0 | 4.49e-01 | 86.7% | 98.7% |
| 1iyxA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 38.0 | 3.48e-01 | 76.7% | 95.2% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 35.0 | 3.81e-01 | 77.8% | 84.0% |
| 1o75A02 | 2.30.30.470 | Mainly Beta › Roll › SH3 type barrels. › Penicillin-binding protein Tp47, domain B | 0.51 | 36.0 | 3.34e-01 | 73.3% | 95.5% |
| 4mp8A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.51 | 41.0 | 3.47e-01 | 90.0% | 98.8% |
| 7vd7A01 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.50 | 37.0 | 3.77e-01 | 84.4% | 78.3% |
ECOD (100)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4087511 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.89 | 85.0 | 7.81e-01 | 100.0% | 81.8% |
| 4278743 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.88 | 79.0 | 7.35e-01 | 100.0% | 78.2% |
| 3959920 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.87 | 82.0 | 7.43e-01 | 100.0% | 79.1% |
| 4528707 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.87 | 80.0 | 7.44e-01 | 100.0% | 80.9% |
| 4032678 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.86 | 78.0 | 7.48e-01 | 100.0% | 86.0% |
| 3654541 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.86 | 80.0 | 7.40e-01 | 100.0% | 87.3% |
| 4506761 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.85 | 74.0 | 6.44e-01 | 100.0% | 63.8% |
| 3990098 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.85 | 76.0 | 7.07e-01 | 100.0% | 78.2% |
| 4032340 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.85 | 75.0 | 7.06e-01 | 100.0% | 80.0% |
| 5068809 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.85 | 79.0 | 5.74e-01 | 100.0% | 51.1% |
| 3590786 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.85 | 77.0 | 7.16e-01 | 100.0% | 80.0% |
| 3282699 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.84 | 79.0 | 7.18e-01 | 100.0% | 78.3% |
| 4369732 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.84 | 78.0 | 7.29e-01 | 100.0% | 82.7% |
| 4145173 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.84 | 78.0 | 7.42e-01 | 100.0% | 85.7% |
| 4479389 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.84 | 78.0 | 7.15e-01 | 100.0% | 80.0% |
| 5058885 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.84 | 79.0 | 6.34e-01 | 100.0% | 73.1% |
| 3657721 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.84 | 78.0 | 6.45e-01 | 100.0% | 64.0% |
| 5043745 | 2.1.1.287 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS | 0.84 | 76.0 | 5.89e-01 | 100.0% | 48.3% |
| 5081609 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.84 | 79.0 | 7.27e-01 | 100.0% | 86.4% |
| 5065884 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.83 | 76.0 | 6.74e-01 | 100.0% | 70.4% |
| 4182108 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.83 | 75.0 | 6.88e-01 | 100.0% | 75.7% |
| 3675935 | 2.1.1.223 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 | 0.83 | 77.0 | 6.66e-01 | 100.0% | 71.1% |
| 5056435 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 72.0 | 7.28e-01 | 98.9% | 93.3% |
| 4099166 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.83 | 77.0 | 7.17e-01 | 100.0% | 82.7% |
| 4680169 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.83 | 74.0 | 6.99e-01 | 100.0% | 81.9% |
| 4968172 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 77.0 | 5.65e-01 | 100.0% | 52.3% |
| 4193351 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.82 | 74.0 | 6.91e-01 | 100.0% | 79.1% |
| 4298544 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.82 | 76.0 | 6.73e-01 | 100.0% | 72.0% |
| 4642580 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.82 | 73.0 | 6.93e-01 | 100.0% | 81.9% |
| 5077301 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.82 | 72.0 | 6.32e-01 | 100.0% | 65.4% |
| 3387410 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.82 | 76.0 | 6.95e-01 | 100.0% | 81.7% |
| 4477850 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.82 | 76.0 | 7.32e-01 | 100.0% | 92.0% |
| 4052975 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.82 | 76.0 | 7.05e-01 | 100.0% | 82.7% |
| 4308192 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.82 | 76.0 | 6.22e-01 | 100.0% | 58.7% |
| 5032464 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.82 | 74.0 | 6.43e-01 | 100.0% | 66.9% |
| 3311947 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.82 | 77.0 | 6.49e-01 | 100.0% | 71.4% |
| 3314558 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.82 | 76.0 | 6.38e-01 | 100.0% | 68.8% |
| 3963927 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.82 | 75.0 | 6.97e-01 | 100.0% | 80.9% |
| 3602923 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 73.0 | 7.06e-01 | 100.0% | 86.0% |
| 5082490 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 74.0 | 6.71e-01 | 100.0% | 97.5% |
| 5054128 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 75.0 | 6.88e-01 | 100.0% | 82.6% |
| 3314889 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.81 | 76.0 | 6.40e-01 | 100.0% | 71.4% |
| 5076884 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 75.0 | 6.26e-01 | 100.0% | 68.3% |
| 3783321 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.80 | 74.0 | 6.32e-01 | 100.0% | 72.9% |
| 5000724 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 65.0 | 6.46e-01 | 86.7% | 91.6% |
| 4562544 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 74.0 | 6.75e-01 | 100.0% | 85.2% |
| 4200438 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.80 | 64.0 | 6.74e-01 | 90.0% | 93.8% |
| 3239000 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 74.0 | 6.49e-01 | 100.0% | 74.6% |
| 159268 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.80 | 74.0 | 5.52e-01 | 100.0% | 63.6% |
| 3838288 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 72.0 | 6.61e-01 | 100.0% | 77.4% |
| 4374423 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.79 | 73.0 | 6.30e-01 | 100.0% | 70.4% |
| 3296674 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.79 | 73.0 | 6.79e-01 | 100.0% | 90.0% |
| 4458313 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.79 | 73.0 | 6.91e-01 | 100.0% | 85.7% |
| 5078973 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 65.0 | 6.86e-01 | 88.9% | 98.8% |
| 4126896 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.79 | 73.0 | 6.20e-01 | 100.0% | 65.0% |
| 4584501 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.79 | 63.0 | 6.63e-01 | 90.0% | 93.8% |
| 5023075 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 71.0 | 6.15e-01 | 100.0% | 65.2% |
| 4288723 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.79 | 61.0 | 6.59e-01 | 90.0% | 97.3% |
| 3436242 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 73.0 | 5.99e-01 | 100.0% | 67.7% |
| 3649141 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.78 | 73.0 | 6.35e-01 | 100.0% | 80.0% |
| 3374948 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.78 | 64.0 | 6.18e-01 | 86.7% | 89.0% |
| 4221404 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.78 | 61.0 | 6.45e-01 | 88.9% | 92.5% |
| 4105153 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.78 | 63.0 | 6.47e-01 | 90.0% | 90.6% |
| 3991931 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.77 | 71.0 | 6.40e-01 | 100.0% | 82.5% |
| 3964458 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 66.0 | 6.67e-01 | 100.0% | 93.3% |
| 4082776 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.77 | 61.0 | 6.46e-01 | 90.0% | 93.8% |
| 4972474 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.77 | 64.0 | 3.73e-01 | 87.8% | 24.6% |
| 4194126 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.77 | 60.0 | 6.39e-01 | 88.9% | 92.5% |
| 4070256 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.77 | 62.0 | 6.52e-01 | 88.9% | 95.0% |
| 4072975 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.77 | 61.0 | 6.44e-01 | 90.0% | 93.8% |
| 4396747 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.77 | 60.0 | 6.35e-01 | 88.9% | 92.5% |
| 3883341 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.77 | 72.0 | 6.16e-01 | 100.0% | 72.6% |
| 3811669 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.77 | 70.0 | 6.56e-01 | 100.0% | 90.0% |
| 4085660 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.76 | 60.0 | 6.39e-01 | 90.0% | 93.8% |
| 4245059 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.76 | 61.0 | 6.32e-01 | 88.9% | 89.4% |
| 4045587 | 2.1.1.79 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecG_wedge | 0.76 | 65.0 | 6.46e-01 | 100.0% | 88.4% |
| 4002116 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 69.0 | 5.88e-01 | 100.0% | 70.3% |
| 4425417 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.76 | 61.0 | 6.42e-01 | 88.9% | 95.0% |
| 4240811 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.76 | 62.0 | 6.37e-01 | 90.0% | 91.8% |
| 3953289 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.76 | 60.0 | 6.16e-01 | 90.0% | 88.2% |
| 4061669 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.75 | 59.0 | 6.21e-01 | 88.9% | 92.5% |
| 4886624 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.75 | 60.0 | 6.38e-01 | 88.9% | 95.0% |
| 5039189 | 2.1.1.287 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS | 0.75 | 63.0 | 5.19e-01 | 90.0% | 52.3% |
| 4183023 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.75 | 59.0 | 6.27e-01 | 88.9% | 93.8% |
| 4141240 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.75 | 59.0 | 6.17e-01 | 90.0% | 93.8% |
| 4204456 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.74 | 61.0 | 6.40e-01 | 92.2% | 97.5% |
| 4341423 | 2.1.1.279 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF4131 | 0.74 | 69.0 | 6.17e-01 | 98.9% | 85.0% |
| 4426103 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.74 | 60.0 | 6.33e-01 | 90.0% | 97.5% |
| 4270702 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.73 | 59.0 | 6.20e-01 | 88.9% | 96.2% |
| 4683474 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.73 | 56.0 | 5.94e-01 | 88.9% | 92.5% |
| 4285193 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.73 | 59.0 | 6.25e-01 | 88.9% | 97.5% |
| 4215942 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.73 | 59.0 | 6.06e-01 | 88.9% | 91.8% |
| 3905944 | 2.1.1.52 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 | 0.73 | 67.0 | 5.50e-01 | 100.0% | 65.2% |
| 4272096 | 2.1.1.57 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N | 0.73 | 62.0 | 6.22e-01 | 91.1% | 94.4% |
| 3791987 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.69 | 63.0 | 5.78e-01 | 100.0% | 90.4% |
| 4001702 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 62.0 | 5.74e-01 | 100.0% | 88.7% |
| 3891602 | 2.1.1.276 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1, REV3_N | 0.69 | 62.0 | 5.51e-01 | 100.0% | 92.3% |
| 3480547 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 62.0 | 5.66e-01 | 100.0% | 90.7% |
| 3179524 | 2.1.1.107 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP40_S1 | 0.62 | 55.0 | 5.41e-01 | 98.9% | 96.8% |
| 3408678 | 2.1.1.86 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_Dis3 | 0.57 | 47.0 | 4.53e-01 | 93.3% | 79.0% |
D2
high
residues 108-305
Domain cluster:
rep: FN667788.1__CBJ93864.1__CPT_0055__00055__D7-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01966.29 best | HD | 33.2 | 7.50e-08 | 59.6% | 96.5% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4q2cA01 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.74 | 54.0 | 4.90e-01 | 75.3% | 85.6% |
| 2pq7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.72 | 60.0 | 6.38e-01 | 90.4% | 98.3% |
| 2r8qA00 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.70 | 65.0 | 5.34e-01 | 98.5% | 89.6% |
| 3kq5A01 | 1.10.3210.40 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.66 | 57.0 | 5.53e-01 | 91.4% | 95.9% |
| 1xx7A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.66 | 54.0 | 5.81e-01 | 84.8% | 100.0% |
| 4mcwA02 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.65 | 51.0 | 5.25e-01 | 90.9% | 83.4% |
| 3kh1A00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.64 | 53.0 | 5.36e-01 | 85.4% | 96.4% |
| 3i7aA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.64 | 57.0 | 4.98e-01 | 92.4% | 66.7% |
| 6o0aA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 35.0 | 3.99e-01 | 74.2% | 77.9% |
| 3tm8B00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.56 | 51.0 | 4.38e-01 | 97.5% | 78.2% |
| 1ithA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 33.0 | 3.79e-01 | 74.2% | 80.9% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 34.0 | 3.87e-01 | 74.2% | 81.2% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 25.0 | 3.64e-01 | 73.7% | 98.9% |
| 3n00A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.53 | 40.0 | 4.15e-01 | 88.9% | 82.6% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.53 | 39.0 | 4.35e-01 | 80.8% | 96.8% |
| 4n1yB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.53 | 43.0 | 4.17e-01 | 91.9% | 75.8% |
| 3p5pA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 43.0 | 3.75e-01 | 90.9% | 79.3% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 35.0 | 4.03e-01 | 89.9% | 98.6% |
| 2q00B00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 26.0 | 3.27e-01 | 79.8% | 79.5% |
| 3dcfA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 26.0 | 2.99e-01 | 89.9% | 64.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039974 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.89 | 84.0 | 8.31e-01 | 97.0% | 98.5% |
| 4951316 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.89 | 86.0 | 8.61e-01 | 99.5% | 100.0% |
| 4967136 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.88 | 84.0 | 8.29e-01 | 98.0% | 99.5% |
| 4551179 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.88 | 84.0 | 8.20e-01 | 98.5% | 97.1% |
| 5054129 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.88 | 82.0 | 8.15e-01 | 96.5% | 99.0% |
| 4217922 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.88 | 84.0 | 8.18e-01 | 98.5% | 97.1% |
| 5069793 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.87 | 80.0 | 8.04e-01 | 95.5% | 100.0% |
| 4998970 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.81 | 67.0 | 7.26e-01 | 87.4% | 99.4% |
| 4399123 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.72 | 52.0 | 5.56e-01 | 81.3% | 84.1% |
| 4993560 | 131.1.1.10 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 | 0.64 | 53.0 | 5.51e-01 | 86.4% | 100.0% |
| 3283570 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.61 | 36.0 | 4.12e-01 | 98.0% | 77.9% |
| 5050751 | 3565.1.1.1 ↗ | alpha bundles › Na/H pumping membrane integral pyrophosphatase › Na/H pumping membrane integral pyrophosphatase › Na/H pumping membrane integral pyrophosphatase › H_PPase | 0.56 | 46.0 | 3.24e-01 | 87.9% | 95.5% |
| 5021087 | 3352.1.1.3 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT | 0.55 | 50.0 | 3.97e-01 | 99.5% | 90.1% |