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term1_stool_scaffold_19_prodigal-single.1__X__X__00119

Bact-Vir

term1_stool_scaffold_19_prodigal-single.1__X__X__00119

Identity

Kingdom:
phage

Quality

75.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-127
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13476.13 best AAA_23 32.8 1.50e-07 95.9% 39.3%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o5vA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.87 73.0 6.26e-01 100.0% 59.1%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.83 74.0 6.79e-01 100.0% 74.5%
3auxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 74.0 5.21e-01 100.0% 33.6%
5h66A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 72.0 6.06e-01 100.0% 64.2%
1qhlA00 3.40.1140.10 Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › 0.73 68.0 5.65e-01 100.0% 79.8%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.69 35.0 3.97e-01 91.9% 63.8%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.55 40.0 3.54e-01 74.8% 72.6%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.55 29.0 3.69e-01 90.2% 88.6%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 42.0 3.03e-01 87.0% 62.3%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 4.01e-01 91.1% 79.5%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 4.09e-01 91.1% 84.3%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.50 35.0 3.87e-01 70.7% 92.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3439330 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.94 73.0 7.46e-01 79.7% 96.6%
4995728 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.88 82.0 6.09e-01 100.0% 43.6%
4396994 3755.3.1.305 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.86 78.0 4.56e-01 100.0% 13.7%
4112414 2004.1.1.301 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.86 74.0 5.22e-01 100.0% 33.1%
5057328 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.85 76.0 5.06e-01 100.0% 27.1%
4998236 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.85 78.0 5.10e-01 100.0% 25.9%
3580295 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.85 82.0 7.02e-01 100.0% 78.2%
4970248 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.85 73.0 5.87e-01 100.0% 51.2%
5026249 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.85 80.0 5.91e-01 100.0% 42.8%
4486484 2004.1.1.799 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_27, AAA_29 0.85 80.0 5.69e-01 100.0% 37.5%
5047148 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.85 78.0 5.52e-01 100.0% 36.1%
4984958 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.84 80.0 5.57e-01 100.0% 35.4%
4165476 2004.1.1.799 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_27, AAA_29 0.84 79.0 5.12e-01 100.0% 26.0%
3379082 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.83 81.0 4.93e-01 100.0% 21.7%
4980165 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 80.0 5.24e-01 100.0% 28.7%
1780951 2004.1.1.514 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B 0.83 75.0 5.22e-01 100.0% 32.6%
4940229 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.83 77.0 5.24e-01 100.0% 31.9%
4991900 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.83 77.0 5.23e-01 100.0% 31.2%
1390452 2004.1.1.748 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_23, SbcC_Walker_B 0.82 74.0 6.39e-01 100.0% 64.3%
5079778 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 78.0 5.11e-01 100.0% 27.3%
5031839 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.82 78.0 5.19e-01 100.0% 29.8%
5054861 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.82 78.0 5.05e-01 100.0% 26.7%
1286610 2004.1.1.478 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_21 0.81 77.0 7.16e-01 100.0% 86.4%
4946869 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 77.0 6.30e-01 100.0% 70.1%
3838381 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.80 77.0 5.36e-01 100.0% 46.6%
5036054 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.80 76.0 4.97e-01 100.0% 26.8%
4978786 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 76.0 4.64e-01 100.0% 22.9%
4276439 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.79 76.0 5.18e-01 100.0% 37.3%
2890623 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.79 75.0 6.61e-01 100.0% 77.5%
4217811 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.78 75.0 5.06e-01 100.0% 36.4%
4381937 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.78 74.0 5.14e-01 100.0% 38.4%
4442508 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.78 74.0 5.14e-01 100.0% 39.1%
4040004 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.77 73.0 5.08e-01 100.0% 38.3%
4423609 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.77 73.0 5.06e-01 100.0% 38.0%
3952629 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.77 73.0 5.38e-01 100.0% 43.9%
1148095 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.77 73.0 5.04e-01 100.0% 38.0%
3961116 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.76 72.0 5.21e-01 100.0% 40.3%
3404297 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.76 35.0 5.25e-01 82.9% 100.0%
3229101 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.69 38.0 4.94e-01 84.6% 93.2%
1097232 3180.1.1.1 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG 0.67 34.0 3.64e-01 91.9% 56.1%
4380331 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.67 37.0 4.89e-01 100.0% 97.1%
5004807 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.65 61.0 4.14e-01 99.2% 87.5%
3231343 77.1.1.10 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › PF28998 0.59 35.0 3.48e-01 92.7% 55.4%
3707862 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.59 35.0 4.31e-01 86.2% 92.5%
3703649 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.57 36.0 4.36e-01 88.6% 96.2%
4225063 3840.1.1.2 a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.55 39.0 4.14e-01 92.7% 81.8%
3288997 304.125.1.2 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins › DUF6461 0.51 42.0 3.99e-01 100.0% 73.3%
4981443 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.51 40.0 2.82e-01 84.6% 80.3%
D2 medium residues 313-383
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 61.0 5.28e-01 80.3% 73.6%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.67 49.0 3.36e-01 78.9% 42.7%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 54.0 4.73e-01 85.9% 94.1%
5cqgA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.65 38.0 2.98e-01 70.4% 28.0%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 3.40e-01 76.1% 59.9%
4my5D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 39.0 3.00e-01 70.4% 29.7%
3vlaA02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 36.0 2.61e-01 73.2% 56.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3497680 5054.1.1.63 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C 0.79 63.0 3.89e-01 95.8% 16.7%
3244401 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.78 64.0 5.41e-01 93.0% 54.8%
4500042 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.77 72.0 4.25e-01 100.0% 26.4%
4018124 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.75 66.0 4.52e-01 97.2% 85.4%
3209956 5086.1.1.179 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Spo7 0.73 57.0 4.24e-01 93.0% 34.7%
3699463 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 69.0 4.69e-01 100.0% 68.4%
5071300 601.27.1.0 alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like 0.71 51.0 3.77e-01 76.1% 54.4%
4945553 4333.1.1.1 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.70 58.0 4.00e-01 91.5% 82.5%
3217457 105.1.1.1 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.69 47.0 4.36e-01 71.8% 98.9%
3634139 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 59.0 3.94e-01 97.2% 38.0%
4465068 140.1.1.14 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.64 47.0 3.34e-01 78.9% 59.1%
4987009 3837.1.1.1 alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.64 50.0 3.86e-01 83.1% 79.3%
3882204 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.63 52.0 3.40e-01 93.0% 37.6%
5031244 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.62 46.0 3.31e-01 80.3% 61.9%
4554534 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.59 47.0 3.45e-01 87.3% 56.3%
3786957 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.56 39.0 2.37e-01 71.8% 85.6%
4977355 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 38.0 2.91e-01 71.8% 68.9%
4012962 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 40.0 2.90e-01 84.5% 77.3%
5033730 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.53 45.0 3.94e-01 94.4% 75.2%
5035240 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.52 44.0 4.40e-01 94.4% 98.7%
4013689 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.51 35.0 2.83e-01 73.2% 81.6%