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term1_stool_scaffold_19_prodigal-single.1__X__X__00132
Bact-Virterm1_stool_scaffold_19_prodigal-single.1__X__X__00132
Identity
- Kingdom:
- phage
Quality
79.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-85
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3njcA00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.67 | 51.0 | 4.09e-01 | 80.0% | 78.4% |
| 1nw1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.65 | 44.0 | 4.16e-01 | 70.0% | 85.4% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.63 | 44.0 | 4.24e-01 | 90.0% | 63.3% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.62 | 50.0 | 5.15e-01 | 100.0% | 94.7% |
| 2p25A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 39.0 | 3.41e-01 | 95.0% | 43.7% |
| 3jcuO01 | 2.40.160.30 | Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor | 0.60 | 52.0 | 4.10e-01 | 100.0% | 83.5% |
| 3hpeA00 | 2.40.128.110 | Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like | 0.59 | 52.0 | 4.17e-01 | 100.0% | 90.2% |
| 1o8vA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 46.0 | 3.96e-01 | 86.3% | 70.7% |
| 3itwA02 | 3.30.720.110 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 38.0 | 4.31e-01 | 95.0% | 94.6% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 39.0 | 3.21e-01 | 70.0% | 43.4% |
| 2kgtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 34.0 | 3.62e-01 | 100.0% | 66.7% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 39.0 | 3.21e-01 | 72.5% | 42.2% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 49.0 | 4.17e-01 | 100.0% | 73.3% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 44.0 | 4.73e-01 | 100.0% | 100.0% |
| 3u2aA00 | 3.30.450.310 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 44.0 | 4.02e-01 | 88.7% | 76.8% |
| 2e1bA02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.56 | 41.0 | 3.55e-01 | 78.8% | 95.3% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 48.0 | 4.16e-01 | 100.0% | 91.3% |
| 2pofA00 | 3.30.428.30 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT family - CDH-like | 0.55 | 47.0 | 3.45e-01 | 96.2% | 54.1% |
| 2grgA01 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.55 | 37.0 | 3.76e-01 | 87.5% | 69.9% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 48.0 | 4.12e-01 | 100.0% | 86.7% |
| 3d8dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 3.95e-01 | 100.0% | 77.0% |
| 3holA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 46.0 | 3.72e-01 | 100.0% | 84.9% |
| 8bddA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 47.0 | 3.05e-01 | 100.0% | 59.7% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 45.0 | 3.78e-01 | 100.0% | 85.2% |
| 3frnA01 | 3.10.129.70 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.52 | 44.0 | 3.64e-01 | 91.3% | 76.3% |
| 3uaqB02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 46.0 | 3.69e-01 | 100.0% | 95.7% |
| 5iroD00 | 2.60.40.3530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 40.0 | 3.75e-01 | 83.7% | 72.5% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 40.0 | 3.97e-01 | 100.0% | 77.0% |
| 3pquA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 45.0 | 3.56e-01 | 100.0% | 85.9% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.52 | 30.0 | 2.85e-01 | 83.7% | 44.6% |
| 2rbbA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 40.0 | 3.50e-01 | 86.3% | 93.0% |
| 3v8uA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 45.0 | 3.51e-01 | 100.0% | 89.9% |
| 2zw5A02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 41.0 | 3.68e-01 | 90.0% | 97.5% |
| 2qqzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 41.0 | 3.67e-01 | 90.0% | 96.5% |
| 4hc5D00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 40.0 | 3.45e-01 | 88.7% | 89.3% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4159666 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.73 | 36.0 | 3.22e-01 | 100.0% | 34.9% |
| 4127839 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.72 | 36.0 | 3.70e-01 | 100.0% | 50.7% |
| 3209968 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.70 | 38.0 | 2.39e-01 | 86.3% | 10.9% |
| 4278906 | 2003.1.5.151 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 | 0.70 | 58.0 | 4.07e-01 | 92.5% | 81.4% |
| 4228206 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.69 | 51.0 | 5.16e-01 | 95.0% | 77.5% |
| 3578208 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 34.0 | 3.95e-01 | 85.0% | 65.5% |
| 3845956 | 316.1.1.20 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › OAS1_C | 0.66 | 54.0 | 4.25e-01 | 90.0% | 70.6% |
| 5037188 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.66 | 41.0 | 4.25e-01 | 90.0% | 66.7% |
| 3912265 | 316.1.1.6 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 | 0.64 | 52.0 | 3.70e-01 | 90.0% | 60.8% |
| 3948528 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.63 | 48.0 | 4.32e-01 | 100.0% | 59.1% |
| 3718563 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.61 | 33.0 | 3.72e-01 | 86.3% | 68.3% |
| 5035610 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.61 | 49.0 | 3.64e-01 | 88.7% | 42.7% |
| 4979138 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.61 | 39.0 | 4.27e-01 | 93.8% | 80.0% |
| 1260456 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.61 | 49.0 | 4.94e-01 | 100.0% | 90.2% |
| 5056572 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.60 | 47.0 | 3.25e-01 | 86.3% | 44.5% |
| None | — | 0.59 | 39.0 | 3.35e-01 | 95.0% | 41.5% | |
| 5060591 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.59 | 47.0 | 3.96e-01 | 90.0% | 75.0% |
| 3604147 | 873.1.1.9 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R,DUF2507 | 0.58 | 43.0 | 3.68e-01 | 80.0% | 86.4% |
| 3604108 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 51.0 | 4.44e-01 | 98.8% | 68.0% |
| 3742330 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.58 | 46.0 | 4.11e-01 | 100.0% | 60.0% |
| 3633647 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.58 | 34.0 | 3.69e-01 | 88.7% | 69.2% |
| 3214565 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.58 | 49.0 | 3.80e-01 | 91.3% | 48.8% |
| 5051349 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.57 | 42.0 | 3.56e-01 | 80.0% | 94.5% |
| 1160782 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.57 | 36.0 | 3.99e-01 | 93.8% | 82.5% |
| 5043924 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.56 | 46.0 | 3.63e-01 | 93.8% | 91.1% |
| 4929578 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 42.0 | 3.67e-01 | 98.8% | 54.2% |
| 3228776 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 46.0 | 3.06e-01 | 90.0% | 28.1% |
| 6883 | 223.5.1.1 ↗ | a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like › YNR034W-A-like | 0.55 | 37.0 | 3.58e-01 | 87.5% | 59.2% |
| 3279614 | 219.1.1.28 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP | 0.54 | 43.0 | 3.61e-01 | 91.3% | 87.1% |
| 3196889 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.54 | 40.0 | 2.55e-01 | 80.0% | 79.6% |
| 4960887 | 814.1.1.0 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase | 0.54 | 40.0 | 3.55e-01 | 100.0% | 54.8% |
| 4967348 | 814.1.1.0 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase | 0.54 | 39.0 | 3.51e-01 | 100.0% | 54.4% |
| 3201503 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 40.0 | 4.03e-01 | 88.7% | 81.2% |
| 3696318 | 5.1.4.249 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 | 0.53 | 50.0 | 3.10e-01 | 100.0% | 97.5% |
| 3991137 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.53 | 49.0 | 3.16e-01 | 100.0% | 87.1% |
| 4986587 | 814.1.1.0 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase | 0.53 | 40.0 | 3.54e-01 | 100.0% | 55.7% |
| 3989851 | 11.1.1.1339 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CFSR | 0.53 | 39.0 | 3.23e-01 | 78.8% | 72.4% |
| 4941507 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.53 | 41.0 | 2.96e-01 | 87.5% | 78.5% |
| 3908519 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 45.0 | 3.83e-01 | 100.0% | 59.2% |
| 3672678 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.52 | 40.0 | 3.98e-01 | 88.7% | 77.6% |
| 1309122 | 5084.1.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TbpB_B_D | 0.52 | 45.0 | 3.59e-01 | 100.0% | 91.5% |
| 4091216 | 3844.2.1.2 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 | 0.52 | 36.0 | 2.66e-01 | 95.0% | 27.8% |
| 3478713 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.52 | 43.0 | 3.78e-01 | 100.0% | 60.8% |
| 3965335 | 5084.1.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TbpB_B_D | 0.52 | 45.0 | 3.33e-01 | 100.0% | 70.2% |
| 3968050 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.51 | 40.0 | 3.59e-01 | 87.5% | 95.0% |
| 3570527 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 45.0 | 3.80e-01 | 100.0% | 59.2% |
| 3482507 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.51 | 47.0 | 2.85e-01 | 100.0% | 91.8% |
| 3255173 | 220.1.1.58 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like | 0.51 | 42.0 | 3.75e-01 | 100.0% | 63.5% |
| 3743938 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 44.0 | 3.74e-01 | 100.0% | 58.5% |
| 4927964 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.50 | 37.0 | 3.21e-01 | 81.2% | 80.0% |
| 3700838 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.50 | 40.0 | 3.42e-01 | 100.0% | 53.8% |