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term1_stool_scaffold_19_prodigal-single.1__X__X__00200

Bact-Vir

term1_stool_scaffold_19_prodigal-single.1__X__X__00200

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-181
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.67 23.0 3.58e-01 92.0% 77.3%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.59 22.0 3.20e-01 94.3% 72.7%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 23.0 3.31e-01 90.9% 92.0%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 21.0 2.77e-01 90.3% 63.6%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.51 22.0 3.03e-01 76.7% 80.7%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.50 23.0 3.22e-01 90.9% 92.3%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934295 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.53 26.0 3.31e-01 89.2% 79.0%
3362248 632.3.1.20 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › PF28698 0.51 17.0 2.92e-01 86.4% 98.0%
3639466 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.50 30.0 3.23e-01 99.4% 68.3%
185111 3554.1.1.1 a+b duplicates or obligate multimers › protein of unknown function (eca1910) › protein of unknown function (eca1910) › protein of unknown function (eca1910) › DUF3861 0.50 25.0 3.44e-01 81.2% 96.6%
D2 high residues 192-293
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.73 49.0 5.50e-01 100.0% 89.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 43.0 5.10e-01 99.0% 92.4%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.68 47.0 4.71e-01 99.0% 70.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.65 49.0 5.12e-01 100.0% 87.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 4.75e-01 98.0% 97.0%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.64 44.0 4.34e-01 99.0% 66.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 39.0 4.59e-01 99.0% 91.3%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.54e-01 99.0% 85.5%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.61 41.0 3.32e-01 99.0% 35.2%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 32.0 3.73e-01 94.1% 78.1%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 31.0 2.55e-01 85.3% 31.7%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 36.0 3.50e-01 95.1% 60.5%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 4.11e-01 92.2% 100.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 33.0 3.88e-01 89.2% 97.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.52 32.0 3.70e-01 99.0% 92.4%
2odpA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 42.0 3.64e-01 90.2% 89.1%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 35.0 3.29e-01 100.0% 58.2%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 37.0 2.60e-01 76.5% 94.5%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 40.0 3.33e-01 100.0% 46.3%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 31.0 2.94e-01 92.2% 50.0%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 33.0 3.37e-01 94.1% 65.4%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.50 42.0 4.33e-01 99.0% 100.0%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.50 43.0 3.73e-01 99.0% 61.4%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4118226 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 43.0 5.08e-01 95.1% 88.6%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 52.0 5.55e-01 100.0% 87.8%
3972550 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 51.0 5.14e-01 100.0% 77.0%
4387099 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 49.0 5.47e-01 95.1% 93.8%
3625817 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 43.0 4.80e-01 98.0% 80.0%
4642857 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 5.49e-01 95.1% 95.0%
4152374 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.44e-01 95.1% 91.7%
4425420 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 49.0 5.35e-01 95.1% 90.6%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 49.0 4.86e-01 100.0% 71.8%
4387111 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 49.0 5.43e-01 95.1% 97.5%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 5.04e-01 95.1% 93.3%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.65 46.0 5.03e-01 99.0% 93.8%
4422325 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.32e-01 95.1% 93.3%
3673944 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.64 42.0 3.75e-01 100.0% 46.3%
5064007 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.64 39.0 3.18e-01 86.3% 34.4%
3740204 4.1.1.71 beta barrels › SH3 › SH3 › SH3 › Gemin7 0.59 42.0 4.52e-01 99.0% 89.4%
3339169 4.1.1.415 beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.58 42.0 4.47e-01 100.0% 90.6%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.57 35.0 3.04e-01 98.0% 37.0%
3406338 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.57 44.0 4.31e-01 100.0% 74.8%
3845351 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.55 38.0 4.01e-01 100.0% 81.1%
3749245 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.54 38.0 3.54e-01 100.0% 56.9%
5055238 3281.1.1.1 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.53 43.0 2.73e-01 91.2% 31.3%
2990398 1118.1.1.1 a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 0.53 41.0 3.44e-01 83.3% 76.8%
None 0.51 32.0 2.35e-01 84.3% 20.4%
D3 high residues 307-381
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ikmA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.68 60.0 5.60e-01 100.0% 81.7%
1aepA00 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.67 58.0 4.70e-01 100.0% 89.5%
2dbhA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 55.0 5.49e-01 100.0% 94.9%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 35.0 3.93e-01 78.7% 69.5%
4i16A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 54.0 5.20e-01 100.0% 91.1%
4griA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.60 33.0 3.82e-01 100.0% 75.5%
2vqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.60 45.0 3.58e-01 82.7% 97.0%
1xg7A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.60 45.0 3.73e-01 82.7% 53.8%
2h9dD00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.60 33.0 3.01e-01 81.3% 39.0%
4ys0A02 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.59 47.0 3.65e-01 86.7% 87.6%
1wlmA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 48.0 4.45e-01 98.7% 100.0%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.57 42.0 4.21e-01 82.7% 96.2%
2af0A02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.56 41.0 4.12e-01 81.3% 86.3%
6ig5A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.56 42.0 3.57e-01 84.0% 66.7%
3p4tA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 42.0 3.46e-01 82.7% 80.7%
2vvwA00 1.10.437.20 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus 0.55 46.0 3.76e-01 96.0% 86.7%
1ze0A02 1.10.4070.10 Mainly Alpha › Orthogonal Bundle › putative redox-enzyme maturation protein fold › putative redox-enzyme maturation protein domain 0.54 40.0 4.05e-01 84.0% 79.5%
2kj5A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.54 39.0 3.43e-01 77.3% 77.6%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.53 40.0 3.97e-01 81.3% 98.7%
2rfqB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 34.0 3.09e-01 84.0% 45.9%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 35.0 3.07e-01 100.0% 43.0%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.52 41.0 3.50e-01 93.3% 100.0%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.51 41.0 3.18e-01 97.3% 37.1%
4fzxC00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 40.0 3.18e-01 89.3% 97.6%
4wriA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 41.0 3.23e-01 97.3% 66.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703221 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.70 58.0 5.64e-01 93.3% 96.5%
4045754 110.1.1.18 alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.68 60.0 5.39e-01 100.0% 79.0%
5071069 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.68 59.0 4.27e-01 100.0% 41.5%
3856774 110.1.1.18 alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.67 59.0 4.72e-01 100.0% 53.6%
2642524 110.1.1.2 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.67 58.0 5.53e-01 100.0% 83.3%
3631135 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.65 54.0 5.57e-01 98.7% 100.0%
3521686 110.1.1.2 alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD 0.63 56.0 5.29e-01 100.0% 84.4%
3540239 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.61 53.0 4.79e-01 100.0% 85.7%
3728616 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 45.0 2.93e-01 81.3% 30.7%
5071437 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.60 51.0 3.70e-01 100.0% 39.5%
3514426 108.1.1.36 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_14 0.60 49.0 4.62e-01 93.3% 90.5%
3896730 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.59 32.0 2.68e-01 80.0% 28.9%
3192713 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 44.0 3.45e-01 81.3% 87.6%
3180486 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.57 49.0 3.93e-01 100.0% 91.3%
3213789 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.57 28.0 3.23e-01 82.7% 65.5%
3253767 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 35.0 2.81e-01 81.3% 30.3%
3742315 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 45.0 4.14e-01 94.7% 85.5%
4616598 2004.1.1.59 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.56 48.0 3.48e-01 96.0% 42.5%
3785607 3220.1.1.0 alpha complex topology › ISWI one complex protein 3 › ISWI one complex protein 3 › ISWI one complex protein 3 0.55 47.0 2.98e-01 100.0% 27.6%
3388115 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 30.0 2.96e-01 93.3% 48.8%
5009915 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.53 46.0 3.34e-01 98.7% 97.3%
4477930 101.1.1.11 alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.52 39.0 3.81e-01 84.0% 78.8%
1562819 169.1.1.1 alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.51 40.0 2.65e-01 89.3% 35.5%
5045909 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 42.0 3.35e-01 94.7% 57.6%
3970811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.50 37.0 3.67e-01 84.0% 82.4%
4977057 3960.1.1.0 alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.50 42.0 3.76e-01 98.7% 84.3%