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term2_saliva_scaffold_0_prodigal-single.1__X__X__00023

Bact-Vir

term2_saliva_scaffold_0_prodigal-single.1__X__X__00023

Identity

Kingdom:
phage

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-86
PDB
Domain cluster: rep: OL828291.1__ULA52763.1__X__00249__D79-130
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 73.0 6.38e-01 100.0% 77.9%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.63 48.0 4.67e-01 82.6% 84.0%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 47.0 4.31e-01 91.3% 78.7%
2i9dA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 45.0 2.98e-01 97.8% 85.4%
3ctkA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.53 42.0 2.98e-01 93.5% 54.5%
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.52 42.0 3.72e-01 100.0% 68.9%
1rtuA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.51 41.0 3.22e-01 97.8% 99.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1030873 101.1.14.1 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-TevI_DNA-bd 0.91 79.0 7.02e-01 100.0% 68.3%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.84 68.0 6.61e-01 87.0% 96.0%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.84 75.0 6.05e-01 100.0% 64.7%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.82 73.0 6.37e-01 100.0% 81.2%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.81 66.0 6.48e-01 89.1% 94.0%
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.81 73.0 6.35e-01 100.0% 76.8%
3976864 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.75 52.0 4.40e-01 76.1% 45.3%
3965440 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.53e-01 73.9% 60.0%
3413357 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.66 51.0 4.38e-01 82.6% 62.9%
3458171 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.66 51.0 4.52e-01 82.6% 67.7%
5074705 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 4.75e-01 97.8% 94.7%
3937269 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 52.0 3.43e-01 100.0% 22.7%
3947892 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 47.0 4.65e-01 89.1% 86.0%
3984393 101.1.9.88 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.59 48.0 3.55e-01 87.0% 62.7%
3997224 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 42.0 3.04e-01 78.3% 42.9%
3437370 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.58 40.0 3.06e-01 73.9% 48.7%
4021446 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 41.0 3.28e-01 93.5% 49.5%