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term2_saliva_scaffold_1_prodigal-single.1__X__X__00058
Bact-Virterm2_saliva_scaffold_1_prodigal-single.1__X__X__00058
Identity
- Kingdom:
- phage
Quality
57.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-52
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hc8A00 | 2.70.150.10 | Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A | 0.68 | 61.0 | 4.57e-01 | 100.0% | 70.8% |
| 6xmpA01 | 2.70.150.10 | Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A | 0.67 | 59.0 | 4.26e-01 | 100.0% | 86.5% |
| 1at0A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.64 | 49.0 | 3.53e-01 | 100.0% | 28.3% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.63 | 49.0 | 4.12e-01 | 100.0% | 48.8% |
| 3vgfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 53.0 | 4.48e-01 | 100.0% | 71.8% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.62 | 53.0 | 4.29e-01 | 100.0% | 50.0% |
| 3aqfB00 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.60 | 50.0 | 3.94e-01 | 100.0% | 45.4% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.57 | 40.0 | 3.69e-01 | 75.0% | 92.1% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.54 | 46.0 | 3.36e-01 | 100.0% | 90.8% |
| 8badA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 48.0 | 3.37e-01 | 100.0% | 34.7% |
| 3ikwA02 | 3.10.540.20 | Alpha Beta › Roll › duf1285 like fold › | 0.53 | 37.0 | 3.36e-01 | 77.1% | 100.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3401480 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.73 | 54.0 | 4.79e-01 | 100.0% | 55.7% |
| 3394913 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.69 | 51.0 | 4.49e-01 | 100.0% | 53.4% |
| 3271564 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.66 | 58.0 | 4.81e-01 | 100.0% | 84.7% |
| 3965564 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.54 | 46.0 | 3.64e-01 | 100.0% | 65.7% |
| 4036369 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.54 | 46.0 | 3.63e-01 | 100.0% | 82.9% |
D2
high
residues 64-125