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term2_saliva_scaffold_1_prodigal-single.1__X__X__00105
Bact-Virterm2_saliva_scaffold_1_prodigal-single.1__X__X__00105
Identity
- Kingdom:
- phage
Quality
83.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-144
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3s63A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.61 | 45.0 | 5.00e-01 | 83.9% | 98.9% |
| 1n83A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.61 | 47.0 | 3.68e-01 | 83.0% | 74.1% |
| 2zj2A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 41.0 | 4.67e-01 | 92.9% | 96.4% |
| 2gtvX00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.59 | 39.0 | 4.02e-01 | 74.1% | 71.2% |
| 1mw9X02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.56 | 46.0 | 4.04e-01 | 87.5% | 89.0% |
| 1gwiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.56 | 46.0 | 3.20e-01 | 92.0% | 64.4% |
| 2l5aA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.54 | 42.0 | 3.33e-01 | 81.2% | 56.4% |
| 2ziuA02 | 1.10.150.670 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Crossover junction endonuclease EME1, DNA-binding domain | 0.54 | 34.0 | 3.76e-01 | 74.1% | 83.1% |
| 2obpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 4.26e-01 | 94.6% | 100.0% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.54 | 38.0 | 3.82e-01 | 73.2% | 92.0% |
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 38.0 | 3.52e-01 | 75.0% | 90.4% |
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 46.0 | 4.40e-01 | 100.0% | 93.3% |
| 3di5A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.52 | 39.0 | 3.56e-01 | 76.8% | 86.6% |
| 4iggB06 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 41.0 | 3.36e-01 | 85.7% | 62.3% |
| 3kmiA00 | 1.20.120.940 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Putative aromatic acid exporter, C-terminal domain | 0.52 | 42.0 | 3.67e-01 | 87.5% | 61.0% |
| 1sumB02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.52 | 38.0 | 3.75e-01 | 75.9% | 78.8% |
| 2nsfA01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.52 | 39.0 | 3.53e-01 | 81.2% | 98.1% |
| 2qe9B01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.51 | 38.0 | 3.44e-01 | 77.7% | 84.2% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.51 | 38.0 | 2.98e-01 | 80.4% | 62.5% |
| 8gtzA03 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.51 | 40.0 | 3.48e-01 | 96.4% | 53.0% |
| 3l22A00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 42.0 | 2.88e-01 | 91.1% | 68.3% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 36.0 | 2.93e-01 | 72.3% | 82.9% |
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 32.0 | 3.00e-01 | 72.3% | 49.7% |
| 4ap2B01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.50 | 35.0 | 3.33e-01 | 71.4% | 60.4% |
| 2yzsA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.50 | 39.0 | 3.16e-01 | 83.9% | 86.0% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027420 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.63 | 46.0 | 3.20e-01 | 76.8% | 36.0% |
| 1790171 | 1050.1.1.1 ↗ | alpha arrays › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) › Bep_C_terminal | 0.61 | 41.0 | 4.23e-01 | 72.3% | 72.9% |
| 4597217 | 1050.1.1.0 ↗ | alpha arrays › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) › BID domain of Bartonella effector protein (Bep) | 0.60 | 41.0 | 4.03e-01 | 73.2% | 63.2% |
| 5052887 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.59 | 39.0 | 4.43e-01 | 74.1% | 95.0% |
| 5001242 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.57 | 49.0 | 4.60e-01 | 99.1% | 95.9% |
| 4946169 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.56 | 49.0 | 4.13e-01 | 100.0% | 88.7% |
| 5024521 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.56 | 48.0 | 3.37e-01 | 93.8% | 32.3% |
| 3461725 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.56 | 44.0 | 4.34e-01 | 83.9% | 85.0% |
| 3278660 | 620.1.1.5 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N | 0.56 | 42.0 | 3.77e-01 | 79.5% | 92.5% |
| 5071075 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.55 | 37.0 | 4.10e-01 | 98.2% | 89.4% |
| 4403727 | 620.1.1.6 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 | 0.55 | 38.0 | 3.42e-01 | 71.4% | 86.3% |
| 5058423 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.54 | 38.0 | 3.48e-01 | 71.4% | 84.0% |
| 5034347 | 7516.1.1.51 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_21 | 0.54 | 43.0 | 2.98e-01 | 83.9% | 54.4% |
| 4880916 | 3207.1.1.1 ↗ | alpha bundles › PmoA › PmoA › PmoA › AMO | 0.54 | 48.0 | 3.67e-01 | 100.0% | 67.8% |
| 3677287 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.54 | 38.0 | 3.35e-01 | 74.1% | 73.7% |
| 1298571 | 3207.1.1.1 ↗ | alpha bundles › PmoA › PmoA › PmoA › AMO | 0.54 | 47.0 | 3.77e-01 | 100.0% | 74.6% |
| 3952729 | 620.1.1.5 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N | 0.54 | 40.0 | 3.52e-01 | 77.7% | 84.8% |
| 3399386 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.53 | 39.0 | 3.32e-01 | 76.8% | 80.0% |
| 3282241 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.53 | 40.0 | 3.75e-01 | 80.4% | 89.3% |
| 3855618 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.52 | 40.0 | 2.93e-01 | 81.2% | 80.6% |
| 4061485 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.52 | 38.0 | 3.37e-01 | 77.7% | 74.3% |
| 3196298 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 37.0 | 3.02e-01 | 75.0% | 47.3% |
| 4440435 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.51 | 41.0 | 3.63e-01 | 87.5% | 72.9% |
| 2482316 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.51 | 39.0 | 3.61e-01 | 80.4% | 86.2% |
| 3288466 | 620.1.1.5 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N | 0.51 | 37.0 | 3.39e-01 | 76.8% | 87.7% |
| 3576930 | 150.5.1.90 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PTPLA | 0.51 | 38.0 | 3.20e-01 | 85.7% | 43.9% |
| 4946343 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.51 | 36.0 | 3.34e-01 | 74.1% | 82.0% |
| 3692626 | 620.1.1.4 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DUF1993 | 0.51 | 37.0 | 3.33e-01 | 76.8% | 84.4% |
| 4046811 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.51 | 38.0 | 2.83e-01 | 79.5% | 83.7% |
| 3962675 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 29.0 | 3.35e-01 | 85.7% | 78.8% |
| 3386126 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.50 | 38.0 | 3.67e-01 | 82.1% | 80.0% |