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term2_saliva_scaffold_1_prodigal-single.1__X__X__00174

Bact-Vir

term2_saliva_scaffold_1_prodigal-single.1__X__X__00174

Identity

Kingdom:
phage

Quality

57.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-65
PDB
D2 high residues 89-209
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2efvA00 3.30.70.3260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF10802, DUF2540 0.67 43.0 5.01e-01 79.3% 96.3%
2vsqA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.52 40.0 3.17e-01 80.2% 74.5%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.52 40.0 3.44e-01 80.2% 89.8%
1nz0D00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 31.0 3.26e-01 89.3% 64.0%
3s3uB00 3.60.70.12 Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase 0.50 42.0 3.10e-01 94.2% 89.0%
1q1gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 38.0 3.12e-01 81.8% 92.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3243442 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.63 48.0 4.86e-01 83.5% 82.4%
4252416 212.1.1.6 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S9 0.51 34.0 3.47e-01 96.7% 69.5%