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term2_saliva_scaffold_1_prodigal-single.1__X__X__00210

Bact-Vir

term2_saliva_scaffold_1_prodigal-single.1__X__X__00210

Identity

Kingdom:
phage

Quality

87.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-137
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 4.45e-01 77.2% 100.0%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 35.0 3.79e-01 97.8% 70.4%
1oygA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 45.0 3.23e-01 86.8% 91.0%
1oqwA00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.56 41.0 4.03e-01 94.9% 70.1%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.46e-01 91.2% 91.3%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 3.22e-01 95.6% 86.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3258377 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.62 39.0 4.70e-01 98.5% 95.6%
3838341 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.60 50.0 3.75e-01 89.0% 95.9%
3993916 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 39.0 4.24e-01 97.8% 85.5%
3734800 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.56 42.0 2.90e-01 77.9% 66.2%
3670829 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.56 44.0 3.29e-01 83.1% 77.9%
4970858 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 37.0 4.10e-01 98.5% 84.5%
3343255 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.55 46.0 3.08e-01 86.8% 98.6%
3603190 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.84e-01 85.3% 50.0%
5033918 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.55 38.0 3.48e-01 70.6% 86.7%
3602029 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.54 43.0 3.87e-01 85.3% 95.9%
3691111 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 38.0 3.58e-01 75.0% 87.3%
3938509 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.53 45.0 3.43e-01 92.6% 90.8%
3224154 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.53 45.0 3.39e-01 93.4% 91.0%
3825410 5.1.4.466 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st, Beta-prop_WDR11_2nd 0.53 45.0 2.76e-01 92.6% 43.6%
3328753 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.52 46.0 3.55e-01 99.3% 93.1%
3969815 4210.1.1.5 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › PA4575 0.52 33.0 3.80e-01 78.7% 87.0%
3060391 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.52 35.0 3.73e-01 97.1% 80.0%
3401205 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.84e-01 83.8% 85.4%
858 9.3.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Qn_am_d_aII 0.51 34.0 3.60e-01 97.8% 76.5%
3508100 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.50 41.0 4.08e-01 97.8% 84.3%
D2 high residues 141-242
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 28.0 3.53e-01 83.3% 77.6%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.50 37.0 3.78e-01 76.5% 86.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3363778 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.59 31.0 4.26e-01 86.3% 98.2%
1698226 206.1.3.23 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.57 39.0 3.08e-01 72.5% 35.3%
4003887 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.54 34.0 3.46e-01 90.2% 64.0%
4519464 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 41.0 3.80e-01 87.3% 76.3%
3955717 302.1.1.0 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.50 38.0 3.65e-01 82.4% 80.0%