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term2_saliva_scaffold_1_prodigal-single.1__X__X__00234
Bact-Virterm2_saliva_scaffold_1_prodigal-single.1__X__X__00234
Identity
- Kingdom:
- phage
Quality
67.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 192-267
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fgxA00 | 3.30.2220.10 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 | 0.67 | 59.0 | 5.49e-01 | 98.7% | 78.1% |
| 6inxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.67 | 33.0 | 3.56e-01 | 80.3% | 55.4% |
| 1owqA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.66 | 31.0 | 3.29e-01 | 80.3% | 48.5% |
| 1itxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.65 | 34.0 | 3.46e-01 | 80.3% | 52.1% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 31.0 | 3.99e-01 | 77.6% | 87.2% |
| 5dezA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.64 | 33.0 | 3.38e-01 | 81.6% | 50.0% |
| 2ob9A00 | 3.30.2220.20 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like | 0.57 | 47.0 | 4.30e-01 | 96.1% | 82.2% |
| 2qv7A02 | 2.60.200.40 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 39.0 | 3.22e-01 | 81.6% | 48.3% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.52 | 29.0 | 2.71e-01 | 80.3% | 40.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954554 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.68 | 59.0 | 5.30e-01 | 96.1% | 75.2% |
| 4957561 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.68 | 57.0 | 5.10e-01 | 92.1% | 78.1% |
| 3586672 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.63 | 54.0 | 4.88e-01 | 94.7% | 73.3% |
| 3233366 | 209.1.1.14 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 | 0.56 | 41.0 | 3.24e-01 | 78.9% | 99.4% |
| 4622598 | 4337.1.1.0 ↗ | a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain | 0.54 | 39.0 | 3.52e-01 | 77.6% | 84.5% |
| 4952787 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 39.0 | 3.52e-01 | 80.3% | 72.7% |
| 3244608 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 38.0 | 2.52e-01 | 84.2% | 78.5% |
| 3273322 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 39.0 | 2.64e-01 | 89.5% | 95.4% |
D2
medium
residues 347-456
Domain cluster:
rep: KY499642.1__AQT28166.1__pVa21_225__00225__D302-421
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hdhA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 33.0 | 3.71e-01 | 99.1% | 85.7% |
| 2vneA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 37.0 | 3.25e-01 | 75.5% | 49.7% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 33.0 | 3.94e-01 | 86.4% | 96.0% |
| 1dhnA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.50 | 35.0 | 3.41e-01 | 71.8% | 99.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3167076 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.59 | 30.0 | 3.73e-01 | 73.6% | 77.1% |
| 4026200 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.52 | 29.0 | 3.47e-01 | 80.9% | 84.3% |
| 3914514 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.51 | 40.0 | 2.95e-01 | 86.4% | 97.0% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.50 | 29.0 | 3.32e-01 | 80.0% | 80.0% |
| 3706753 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 38.0 | 3.82e-01 | 91.8% | 80.0% |
| 3733600 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.50 | 36.0 | 3.00e-01 | 75.5% | 47.3% |