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term3_saliva_scaffold_0_prodigal-single.1__X__X__00149
Bact-Virterm3_saliva_scaffold_0_prodigal-single.1__X__X__00149
Identity
- Kingdom:
- phage
Quality
51.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-77
D2
medium
residues 78-112_523-617
D3
medium
residues 618-764
D4
medium
residues 765-867
D5
medium
residues 868-955
D6
medium
residues 956-1101
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w8aA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.59 | 50.0 | 4.62e-01 | 100.0% | 71.4% |
| 4gm2A00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 41.0 | 3.88e-01 | 88.4% | 86.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3729229 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.63 | 56.0 | 4.56e-01 | 100.0% | 68.8% |
| 3464748 | 207.1.1.97 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2 | 0.61 | 55.0 | 3.66e-01 | 100.0% | 24.5% |
| 3445018 | 207.1.1.102 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 | 0.59 | 53.0 | 4.96e-01 | 100.0% | 81.6% |
| 3567295 | 207.1.1.55 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 | 0.56 | 50.0 | 4.66e-01 | 98.6% | 80.6% |
| 4891019 | 207.1.1.149 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4, LRR_9 | 0.53 | 43.0 | 4.12e-01 | 93.2% | 75.0% |
D7
medium
residues 1102-1262
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gjzA02 | 3.50.30.60 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like | 0.66 | 41.0 | 4.11e-01 | 73.9% | 59.8% |
| 3tnjA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 33.0 | 3.73e-01 | 98.8% | 62.0% |
| 6kikA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.64 | 51.0 | 4.28e-01 | 97.5% | 49.8% |
| 3up8A00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.63 | 47.0 | 3.96e-01 | 97.5% | 44.8% |
| 4xk2B00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.61 | 48.0 | 3.87e-01 | 97.5% | 43.0% |
| 2z63A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.60 | 51.0 | 3.44e-01 | 100.0% | 25.3% |
| 4jz5A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 47.0 | 4.35e-01 | 97.5% | 64.6% |
| 4kruA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 46.0 | 4.25e-01 | 97.5% | 61.7% |
| 5irnA02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.58 | 35.0 | 4.27e-01 | 84.5% | 100.0% |
| 5jx5A00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.58 | 52.0 | 4.19e-01 | 98.8% | 68.6% |
| 1pz1A00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.58 | 48.0 | 3.82e-01 | 97.5% | 43.4% |
| 2ffiA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 45.0 | 3.84e-01 | 96.3% | 51.3% |
| 1hgxA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 36.0 | 3.58e-01 | 96.9% | 62.8% |
| 3kcnB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 36.0 | 3.85e-01 | 97.5% | 75.9% |
| 4j3cB02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.55 | 29.0 | 2.89e-01 | 76.4% | 45.5% |
| 4arnA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.55 | 49.0 | 4.09e-01 | 100.0% | 56.3% |
| 4gieA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.55 | 46.0 | 3.81e-01 | 98.1% | 50.7% |
| 1mi3A00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.54 | 48.0 | 3.84e-01 | 97.5% | 48.6% |
| 3krbA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.54 | 47.0 | 3.85e-01 | 97.5% | 50.2% |
| 2qtfA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 45.0 | 4.51e-01 | 97.5% | 86.8% |
| 4c81A00 | 3.30.1330.50 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 0.54 | 42.0 | 4.29e-01 | 99.4% | 83.3% |
| 6ovqA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.54 | 47.0 | 3.89e-01 | 97.5% | 53.3% |
| 1qwkA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.53 | 47.0 | 3.84e-01 | 97.5% | 94.6% |
| 6ulxA01 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.53 | 26.0 | 3.35e-01 | 96.9% | 79.3% |
| 5ujwD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 46.0 | 4.03e-01 | 96.9% | 61.2% |
| 2j6vA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.53 | 47.0 | 3.99e-01 | 98.8% | 71.8% |
| 5ndxA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 47.0 | 3.73e-01 | 98.8% | 56.6% |
| 3i5xA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 45.0 | 3.95e-01 | 98.8% | 63.2% |
| 1i60A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 46.0 | 3.88e-01 | 98.8% | 72.1% |
| 1h3fA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 33.0 | 3.11e-01 | 100.0% | 53.3% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3664605 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.64 | 49.0 | 4.82e-01 | 100.0% | 73.1% |
| 331445 | 2488.1.1.12 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrans_RNA | 0.64 | 33.0 | 3.24e-01 | 75.8% | 45.4% |
| 3343011 | 207.1.1.96 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 | 0.59 | 53.0 | 4.22e-01 | 97.5% | 49.2% |
| 3274060 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 52.0 | 3.78e-01 | 100.0% | 40.2% |
| 3469305 | 207.1.1.99 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 | 0.57 | 51.0 | 3.72e-01 | 96.9% | 36.6% |
| 4012995 | 207.1.1.243 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DUF7730 | 0.57 | 49.0 | 4.19e-01 | 100.0% | 56.6% |
| 5006335 | 2004.1.1.1200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF835 | 0.57 | 41.0 | 4.26e-01 | 95.0% | 80.7% |
| 3450762 | 207.1.1.172 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBD, LRR_At5g56370 | 0.57 | 47.0 | 3.61e-01 | 100.0% | 38.9% |
| 4445192 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 52.0 | 3.49e-01 | 100.0% | 26.6% |
| None | — | 0.57 | 50.0 | 4.11e-01 | 100.0% | 53.1% | |
| 3435480 | 207.1.1.99 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 | 0.57 | 52.0 | 3.88e-01 | 100.0% | 41.0% |
| 3468079 | 207.1.1.99 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 | 0.56 | 49.0 | 3.65e-01 | 100.0% | 37.3% |
| 3435909 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 50.0 | 4.76e-01 | 96.3% | 86.8% |
| 3461182 | 207.1.1.99 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At5g56370 | 0.56 | 51.0 | 3.87e-01 | 100.0% | 42.3% |
| 4888605 | 207.1.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 | 0.55 | 44.0 | 3.89e-01 | 97.5% | 56.0% |
| 4906193 | 207.1.1.272 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › NLRC4_HD2 | 0.55 | 44.0 | 3.89e-01 | 97.5% | 56.0% |
| 222214 | 207.1.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 | 0.55 | 49.0 | 4.11e-01 | 100.0% | 57.4% |
| 3447521 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 49.0 | 3.66e-01 | 100.0% | 45.1% |
| 166317 | 301.5.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF › 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF › YgbB | 0.54 | 40.0 | 4.18e-01 | 98.1% | 82.7% |
| 3273158 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 45.0 | 3.78e-01 | 99.4% | 51.8% |
| 5009605 | 327.5.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 | 0.53 | 27.0 | 3.48e-01 | 73.9% | 82.1% |
| 3378761 | 2002.1.1.53 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N | 0.53 | 41.0 | 4.25e-01 | 96.9% | 86.4% |
| 4933022 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.52 | 26.0 | 3.11e-01 | 74.5% | 67.8% |
| 3644156 | 2004.1.1.98 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad17 | 0.52 | 40.0 | 3.74e-01 | 96.3% | 62.9% |
| 4284403 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.52 | 36.0 | 3.91e-01 | 95.0% | 83.7% |
| 3406380 | 207.1.1.130 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 | 0.51 | 47.0 | 3.45e-01 | 100.0% | 46.5% |
| 5060625 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.51 | 45.0 | 4.14e-01 | 97.5% | 82.3% |
| 3302542 | 207.1.1.97 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2 | 0.50 | 45.0 | 3.50e-01 | 100.0% | 45.3% |