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term3_saliva_scaffold_0_prodigal-single.1__X__X__00178
Bact-Virterm3_saliva_scaffold_0_prodigal-single.1__X__X__00178
Identity
- Kingdom:
- phage
Quality
77.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 215-304
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.70 | 39.0 | 4.58e-01 | 73.3% | 80.3% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.69 | 49.0 | 5.15e-01 | 74.4% | 84.1% |
| 4hgzA02 | 2.20.25.570 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.66 | 40.0 | 4.81e-01 | 73.3% | 93.3% |
| 2mqdA00 | 3.30.1460.60 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.64 | 41.0 | 3.76e-01 | 75.6% | 50.4% |
| 3sluB01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 44.0 | 4.40e-01 | 75.6% | 97.8% |
| 4bboA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.61 | 51.0 | 4.78e-01 | 92.2% | 80.5% |
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.61 | 39.0 | 4.56e-01 | 71.1% | 93.7% |
| 3edpA02 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.60 | 43.0 | 3.68e-01 | 74.4% | 82.2% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.60 | 37.0 | 4.44e-01 | 73.3% | 95.0% |
| 1ohfA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.58 | 49.0 | 4.29e-01 | 94.4% | 68.8% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 44.0 | 3.93e-01 | 88.9% | 59.8% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 45.0 | 3.90e-01 | 88.9% | 57.6% |
| 3ap9A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.85e-01 | 91.1% | 84.8% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 4.31e-01 | 81.1% | 94.7% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 44.0 | 4.06e-01 | 96.7% | 69.3% |
| 3s8zA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 46.0 | 3.24e-01 | 100.0% | 45.6% |
| 2ntkB00 | 3.60.20.20 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like | 0.51 | 40.0 | 3.11e-01 | 84.4% | 74.8% |
| 2v7sA00 | 3.30.2030.20 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.51 | 34.0 | 2.82e-01 | 82.2% | 36.1% |
| 2ivfC00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 2.92e-01 | 78.9% | 72.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593518 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.70 | 50.0 | 3.97e-01 | 86.7% | 38.3% |
| 1348622 | 6150.1.1.1 ↗ | a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › Lreu_0056_like | 0.64 | 41.0 | 3.76e-01 | 75.6% | 50.4% |
| 3597007 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.63 | 44.0 | 3.50e-01 | 80.0% | 37.6% |
| 4279384 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.61 | 43.0 | 4.56e-01 | 95.6% | 83.3% |
| 3690594 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.61 | 55.0 | 3.39e-01 | 100.0% | 33.1% |
| 3266626 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.61 | 44.0 | 4.27e-01 | 85.6% | 68.7% |
| 3587070 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 47.0 | 3.96e-01 | 81.1% | 79.3% |
| 4992282 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.59 | 45.0 | 3.97e-01 | 82.2% | 63.7% |
| 4332836 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 53.0 | 3.41e-01 | 100.0% | 55.0% |
| 2582102 | 3338.2.1.2 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin | 0.59 | 48.0 | 4.25e-01 | 88.9% | 70.5% |
| 1874264 | 6176.1.1.1 ↗ | beta sandwiches › Insertion domain in tetravirus coat protein › Insertion domain in tetravirus coat protein › Insertion domain in tetravirus coat protein › Peptidase_A21 | 0.58 | 49.0 | 4.28e-01 | 94.4% | 69.3% |
| 3587042 | 331.3.1.32 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3284 | 0.58 | 46.0 | 4.04e-01 | 92.2% | 57.0% |
| 3282063 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.56 | 45.0 | 4.04e-01 | 86.7% | 64.0% |
| 4182021 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.53 | 46.0 | 4.41e-01 | 95.6% | 81.9% |
| 4459575 | 274.1.1.13 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH | 0.51 | 40.0 | 3.46e-01 | 84.4% | 73.6% |
D2
medium
residues 151-214
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pe5B02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 45.0 | 3.38e-01 | 75.0% | 80.6% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 42.0 | 2.55e-01 | 100.0% | 53.2% |
| 1tyyA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.50 | 38.0 | 2.64e-01 | 90.6% | 59.6% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004837 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.54 | 40.0 | 2.74e-01 | 84.4% | 66.2% |
| 3499652 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 39.0 | 2.57e-01 | 79.7% | 94.3% |
| 1488002 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.53 | 44.0 | 3.73e-01 | 96.9% | 80.9% |
| 4139499 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.53 | 40.0 | 2.42e-01 | 87.5% | 85.9% |
| 5015285 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 2.70e-01 | 100.0% | 43.1% |