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term4_saliva_scaffold_12_prodigal-single.1__X__X__00017
Bact-Virterm4_saliva_scaffold_12_prodigal-single.1__X__X__00017
Identity
- Kingdom:
- phage
Quality
82.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-78
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 41.0 | 4.44e-01 | 90.5% | 68.3% |
| 1r0dA00 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.70 | 53.0 | 3.95e-01 | 82.4% | 95.9% |
| 1kxpD01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.68 | 47.0 | 4.50e-01 | 98.6% | 62.8% |
| 1e6cA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 40.0 | 3.05e-01 | 90.5% | 27.6% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.64 | 46.0 | 4.44e-01 | 95.9% | 67.1% |
| 3w0fA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 54.0 | 4.50e-01 | 97.3% | 68.4% |
| 5gz8A00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.63 | 47.0 | 3.23e-01 | 81.1% | 59.2% |
| 4csrB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.62 | 45.0 | 4.43e-01 | 77.0% | 84.1% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 43.0 | 4.63e-01 | 90.5% | 84.4% |
| 3p5pA03 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 50.0 | 3.36e-01 | 90.5% | 22.0% |
| 3pvuA02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.61 | 50.0 | 4.86e-01 | 87.8% | 95.0% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.61 | 41.0 | 3.81e-01 | 85.1% | 54.2% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 39.0 | 4.20e-01 | 87.8% | 76.6% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.59 | 40.0 | 3.74e-01 | 89.2% | 55.9% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.59 | 38.0 | 3.83e-01 | 97.3% | 64.5% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.58 | 44.0 | 4.23e-01 | 83.8% | 83.9% |
| 4bj1A01 | 1.20.120.1650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 44.0 | 3.90e-01 | 85.1% | 85.0% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 36.0 | 4.30e-01 | 82.4% | 96.1% |
| 5y06A01 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 39.0 | 2.73e-01 | 89.2% | 23.1% |
| 8sbeA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.56 | 44.0 | 3.37e-01 | 87.8% | 57.8% |
| 7aalA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 47.0 | 3.15e-01 | 90.5% | 79.3% |
| 4q20A01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.56 | 44.0 | 4.30e-01 | 90.5% | 76.8% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.56 | 39.0 | 3.76e-01 | 98.6% | 62.9% |
| 2da4A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 34.0 | 3.63e-01 | 81.1% | 69.7% |
| 2xq9A02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.55 | 44.0 | 3.84e-01 | 90.5% | 86.8% |
| 4h33A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 46.0 | 4.31e-01 | 90.5% | 86.8% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 40.0 | 3.65e-01 | 81.1% | 58.2% |
| 1kf6A03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.54 | 46.0 | 3.90e-01 | 91.9% | 62.5% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 44.0 | 3.77e-01 | 90.5% | 62.8% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.53 | 38.0 | 3.75e-01 | 75.7% | 74.1% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.53 | 43.0 | 3.60e-01 | 97.3% | 69.5% |
| 3qd2B02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 46.0 | 3.56e-01 | 100.0% | 77.7% |
| 3txsC01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 38.0 | 3.85e-01 | 91.9% | 77.3% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 38.0 | 3.57e-01 | 89.2% | 62.1% |
| 2jbyA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.52 | 40.0 | 3.39e-01 | 83.8% | 71.7% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.51 | 39.0 | 3.91e-01 | 90.5% | 80.5% |
| 1n7hB01 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.50 | 43.0 | 3.86e-01 | 91.9% | 86.1% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3842028 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.80 | 63.0 | 4.62e-01 | 85.1% | 34.4% |
| 3912094 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.78 | 62.0 | 4.42e-01 | 93.2% | 31.0% |
| 4026839 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.78 | 61.0 | 4.45e-01 | 91.9% | 33.0% |
| 3886320 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.78 | 62.0 | 4.55e-01 | 93.2% | 34.1% |
| 3601447 | 130.1.2.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 | 0.78 | 60.0 | 4.29e-01 | 83.8% | 29.8% |
| 3171543 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.73 | 64.0 | 4.41e-01 | 94.6% | 48.3% |
| 3705680 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.72 | 47.0 | 4.36e-01 | 90.5% | 52.6% |
| 4028828 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.72 | 56.0 | 5.89e-01 | 82.4% | 95.4% |
| 4445092 | 130.1.2.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 | 0.71 | 63.0 | 4.20e-01 | 95.9% | 33.8% |
| None | — | 0.71 | 63.0 | 4.46e-01 | 94.6% | 44.4% | |
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.71 | 50.0 | 5.49e-01 | 74.3% | 95.0% |
| 3253225 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.71 | 54.0 | 5.16e-01 | 91.9% | 71.8% |
| 3630915 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.69 | 64.0 | 4.48e-01 | 100.0% | 46.0% |
| 4062718 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.69 | 45.0 | 5.17e-01 | 74.3% | 100.0% |
| 5046473 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.68 | 56.0 | 5.24e-01 | 89.2% | 83.3% |
| 3659915 | 192.7.1.45 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Na_sulph_symp | 0.68 | 37.0 | 3.78e-01 | 90.5% | 53.3% |
| 4943532 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 44.0 | 4.57e-01 | 90.5% | 74.3% |
| 4955688 | 2.21.1.5 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 | 0.65 | 46.0 | 3.60e-01 | 94.6% | 33.9% |
| 3646157 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.65 | 53.0 | 4.12e-01 | 90.5% | 67.9% |
| 4956384 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.64 | 45.0 | 3.33e-01 | 73.0% | 77.4% |
| 3225754 | 632.6.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit | 0.64 | 43.0 | 4.00e-01 | 70.3% | 76.8% |
| 3240453 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 46.0 | 4.12e-01 | 90.5% | 58.0% |
| 4975514 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.61 | 43.0 | 4.22e-01 | 94.6% | 68.8% |
| 3696367 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 45.0 | 4.51e-01 | 93.2% | 78.7% |
| 3190576 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.61 | 44.0 | 3.80e-01 | 90.5% | 50.9% |
| 3603670 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.59 | 44.0 | 3.14e-01 | 90.5% | 28.1% |
| 3952446 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.58 | 38.0 | 4.02e-01 | 87.8% | 75.4% |
| 5063677 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.58 | 43.0 | 3.15e-01 | 90.5% | 29.5% |
| 4995687 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.58 | 33.0 | 3.60e-01 | 82.4% | 68.3% |
| 4974229 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 41.0 | 3.14e-01 | 89.2% | 32.0% |
| 5039595 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.57 | 43.0 | 3.07e-01 | 90.5% | 28.1% |
| 5002671 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.57 | 41.0 | 3.18e-01 | 90.5% | 35.0% |
| 3520105 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.56 | 47.0 | 3.66e-01 | 90.5% | 43.9% |
| 222991 | 192.10.1.1 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › DksA_N | 0.56 | 39.0 | 3.64e-01 | 90.5% | 58.7% |
| 3575045 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.55 | 36.0 | 2.39e-01 | 89.2% | 14.9% |
| 3885014 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 45.0 | 3.82e-01 | 90.5% | 60.0% |
| 3234270 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.54 | 43.0 | 4.16e-01 | 90.5% | 75.3% |
| 3772767 | 5086.1.1.87 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING | 0.53 | 40.0 | 3.40e-01 | 90.5% | 48.8% |
| 3553813 | 3291.1.1.82 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING | 0.53 | 40.0 | 3.38e-01 | 90.5% | 48.8% |
| 3736265 | 109.4.1.862 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 | 0.52 | 42.0 | 2.48e-01 | 87.8% | 17.6% |
| 4970972 | 604.5.1.83 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › NfeD_membrane | 0.52 | 42.0 | 4.11e-01 | 90.5% | 81.2% |
| 3505389 | 2004.1.1.144 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 | 0.52 | 44.0 | 2.79e-01 | 93.2% | 31.0% |
| 3752758 | 3755.3.1.467 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DRC7_C | 0.51 | 42.0 | 3.36e-01 | 90.5% | 76.5% |
| 3192973 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 42.0 | 2.98e-01 | 98.6% | 63.8% |