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term4_saliva_scaffold_12_prodigal-single.1__X__X__00046

Bact-Vir

term4_saliva_scaffold_12_prodigal-single.1__X__X__00046

Identity

Kingdom:
phage

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-132
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 47.0 5.00e-01 71.2% 67.0%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.79 47.0 4.74e-01 71.2% 59.3%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 50.0 5.99e-01 76.8% 97.6%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 50.0 5.23e-01 76.0% 71.6%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 47.0 4.72e-01 73.6% 63.6%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.72 48.0 5.22e-01 74.4% 80.2%
2cayB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 46.0 4.57e-01 73.6% 63.4%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 52.0 5.26e-01 84.0% 78.0%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 46.0 4.72e-01 76.8% 70.2%
3f5rA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 44.0 4.66e-01 72.0% 72.6%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.63 45.0 4.42e-01 73.6% 82.1%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.63 45.0 4.41e-01 72.8% 83.3%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 26.0 3.46e-01 75.2% 88.1%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4962251 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.84 51.0 4.97e-01 73.6% 56.3%
5022340 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.82 45.0 5.93e-01 71.2% 97.1%
3591459 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.81 54.0 6.44e-01 80.8% 100.0%
4959998 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 53.0 5.77e-01 76.8% 80.0%
4983382 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.79 56.0 5.59e-01 72.8% 75.4%
3782222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 48.0 4.50e-01 77.6% 50.3%
4926892 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.78 48.0 5.03e-01 74.4% 67.8%
4960002 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 51.0 5.93e-01 74.4% 93.3%
3226939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 49.0 5.47e-01 77.6% 81.0%
4941649 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 46.0 5.25e-01 74.4% 80.0%
3743890 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 48.0 4.54e-01 76.8% 54.5%
4986577 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.75 47.0 4.97e-01 72.8% 70.0%
3199439 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 50.0 4.28e-01 74.4% 44.2%
4202484 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.75 51.0 4.56e-01 80.8% 51.2%
4140296 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.75 47.0 4.54e-01 73.6% 56.4%
3250619 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 52.0 5.58e-01 76.0% 81.8%
4012071 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 56.0 3.89e-01 79.2% 49.6%
5044748 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 46.0 4.97e-01 72.0% 73.3%
4203238 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.74 48.0 3.78e-01 80.8% 32.8%
4674129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 48.0 5.19e-01 80.8% 79.0%
3604159 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 45.0 4.86e-01 72.0% 72.2%
3224914 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.72 48.0 5.01e-01 80.0% 73.0%
3190430 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 48.0 4.22e-01 74.4% 45.9%
3584249 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.72 49.0 5.25e-01 82.4% 79.1%
3228052 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.72 48.0 4.34e-01 77.6% 50.0%
3241979 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.72 47.0 5.09e-01 78.4% 78.1%
3693957 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 49.0 4.17e-01 76.8% 44.1%
3715264 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 48.0 4.89e-01 70.4% 70.0%
5009939 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 47.0 5.13e-01 76.8% 80.0%
3810543 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.71 50.0 5.36e-01 85.6% 82.7%
3482227 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.71 46.0 4.82e-01 75.2% 71.3%
3906073 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 48.0 5.24e-01 85.6% 82.9%
4186865 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.71 49.0 3.71e-01 80.0% 30.9%
3555634 220.1.1.43 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.71 52.0 4.91e-01 77.6% 64.8%
3705541 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 48.0 5.30e-01 72.0% 86.0%
4610858 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.70 44.0 4.79e-01 72.0% 74.3%
5081178 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 51.0 4.92e-01 74.4% 79.9%
3613385 220.1.1.21 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SPT16 0.70 53.0 5.36e-01 82.4% 79.2%
3999570 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.70 49.0 5.28e-01 82.4% 84.8%
4928403 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 49.0 4.50e-01 72.0% 83.9%
4012772 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 54.0 5.49e-01 82.4% 84.0%
4148941 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.69 47.0 5.05e-01 72.0% 81.9%
3803797 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.68 48.0 4.97e-01 73.6% 75.8%
4343392 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 47.0 5.02e-01 74.4% 80.9%
3785687 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.67 47.0 4.94e-01 76.8% 78.3%
3801480 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.67 48.0 4.47e-01 79.2% 60.0%
3221103 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 45.0 4.89e-01 76.0% 81.9%
3902169 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 48.0 4.85e-01 76.0% 74.4%
3313202 220.1.1.181 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_ULP 0.66 48.0 4.73e-01 74.4% 74.6%
3289254 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.66 44.0 4.91e-01 73.6% 88.4%
4488977 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 47.0 4.54e-01 80.0% 65.7%
3344404 220.1.1.182 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.65 46.0 4.11e-01 73.6% 65.7%
3496967 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 48.0 4.65e-01 76.8% 69.3%
3389863 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 48.0 4.83e-01 76.0% 81.6%
3242056 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 49.0 4.58e-01 79.2% 65.2%
3589974 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 45.0 4.24e-01 70.4% 64.8%
3536274 220.1.1.55 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SYCP2_SLD 0.65 44.0 4.52e-01 72.8% 72.5%
4454427 220.1.1.9 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Voldacs 0.64 50.0 4.33e-01 81.6% 61.6%
4257154 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.64 43.0 4.60e-01 72.8% 79.6%
4928214 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.63 46.0 4.53e-01 75.2% 71.6%
3210606 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.62 46.0 4.70e-01 77.6% 78.4%
3686517 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.62 50.0 4.58e-01 85.6% 68.5%
4017529 220.1.1.112 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 0.62 51.0 4.79e-01 87.2% 76.0%
3579945 220.1.1.49 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Carm_PH 0.61 46.0 4.27e-01 78.4% 64.5%
3192871 220.1.1.194 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2nd_LRR 0.61 43.0 3.81e-01 76.0% 51.4%
3767494 220.1.1.55 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SYCP2_SLD 0.61 42.0 4.35e-01 75.2% 74.2%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 4.23e-01 73.6% 76.8%
3877687 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 43.0 4.33e-01 79.2% 77.7%
4325844 5085.1.1.2 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.57 39.0 2.62e-01 71.2% 36.7%
3473061 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.70e-01 72.8% 70.6%
4165306 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.56 30.0 3.22e-01 72.0% 58.1%
3487713 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.81e-01 83.2% 73.9%