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term4_saliva_scaffold_12_prodigal-single.1__X__X__00047

Bact-Vir

term4_saliva_scaffold_12_prodigal-single.1__X__X__00047

Identity

Kingdom:
phage

Quality

75.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-63
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.71 51.0 4.92e-01 77.0% 100.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 5.47e-01 82.0% 100.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 52.0 4.77e-01 100.0% 67.1%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.64 49.0 3.97e-01 82.0% 52.7%
4msxA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 43.0 3.82e-01 80.3% 87.1%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 40.0 3.11e-01 77.0% 92.9%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 46.0 2.97e-01 93.4% 23.1%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.55 42.0 3.60e-01 85.2% 91.3%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 40.0 2.91e-01 78.7% 93.7%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 46.0 4.10e-01 98.4% 84.3%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.53 40.0 4.16e-01 83.6% 100.0%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 37.0 3.61e-01 78.7% 74.0%
3e0rA02 3.10.180.40 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › C3-degrading proteinase like domains 0.52 35.0 2.88e-01 70.5% 76.0%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.94e-01 80.3% 53.6%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.82e-01 100.0% 66.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.51 35.0 3.44e-01 73.8% 100.0%
4okcA01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.51 36.0 3.51e-01 77.0% 82.6%
1w1wA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 40.0 2.72e-01 95.1% 33.2%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 2.83e-01 100.0% 33.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3708283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 63.0 5.62e-01 100.0% 95.3%
4930861 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 58.0 5.77e-01 100.0% 95.4%
3961013 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 51.0 4.99e-01 100.0% 78.6%
5035934 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 56.0 5.52e-01 98.4% 93.8%
5040230 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 55.0 5.40e-01 100.0% 92.3%
3663352 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 42.0 4.28e-01 70.5% 78.3%
5024805 4.2.1.3 beta barrels › SH3 › SAND › SAND › RAMA 0.62 53.0 4.91e-01 98.4% 80.0%
3840072 4.2.1.0 beta barrels › SH3 › SAND › SAND 0.61 52.0 4.75e-01 100.0% 78.8%
3845351 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.60 51.0 4.56e-01 100.0% 81.1%
3282690 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.59 43.0 3.57e-01 93.4% 40.8%
4937102 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 38.0 2.93e-01 86.9% 27.6%
3749245 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.59 50.0 4.01e-01 100.0% 55.4%
4982561 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 40.0 4.38e-01 78.7% 100.0%
4515677 241.2.1.1 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.58 42.0 3.48e-01 78.7% 78.1%
5032782 9.23.1.0 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.58 44.0 3.97e-01 86.9% 100.0%
5012352 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.57 40.0 3.67e-01 75.4% 65.9%
3913637 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.56 46.0 4.23e-01 100.0% 77.8%
3594393 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.56 43.0 3.98e-01 83.6% 83.7%
4985176 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 43.0 3.70e-01 90.2% 70.0%
3755862 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 37.0 3.24e-01 72.1% 74.7%
3388829 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 42.0 2.64e-01 95.1% 18.8%
4112414 2004.1.1.301 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.52 42.0 2.78e-01 100.0% 79.4%
3631418 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.52 33.0 3.34e-01 93.4% 64.4%
5019252 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 41.0 2.51e-01 96.7% 64.5%
4345467 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 41.0 2.56e-01 96.7% 62.4%
3587589 11.1.4.36 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.50 39.0 3.39e-01 90.2% 96.2%
D2 high residues 72-127
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 41.0 2.81e-01 80.4% 95.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 39.0 3.31e-01 98.2% 47.9%
6tdxG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.53 40.0 2.87e-01 92.9% 86.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 36.0 3.16e-01 96.4% 46.7%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 39.0 3.47e-01 85.7% 60.5%
3u6uC00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.51 40.0 2.63e-01 89.3% 77.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.51 39.0 2.91e-01 89.3% 58.7%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.50 37.0 2.73e-01 78.6% 30.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037083 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.58 45.0 4.12e-01 100.0% 62.5%
5036649 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.55 41.0 3.72e-01 100.0% 60.0%
3618241 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 37.0 3.18e-01 75.0% 98.1%
4933800 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.53 41.0 3.72e-01 96.4% 62.5%
3707389 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.51 41.0 3.56e-01 100.0% 55.8%
5061359 2003.1.5.19 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.51 41.0 2.58e-01 94.6% 43.5%
2980434 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.50 40.0 2.86e-01 92.9% 83.9%
D3 high residues 179-225
PDB
Domain cluster: representative
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 61.0 5.80e-01 100.0% 91.4%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.69 45.0 3.17e-01 72.3% 21.2%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 59.0 5.14e-01 100.0% 79.7%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.68 57.0 3.72e-01 100.0% 21.7%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.68 57.0 4.66e-01 100.0% 62.1%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.67 55.0 3.88e-01 100.0% 36.0%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 56.0 5.03e-01 100.0% 67.6%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.67 56.0 4.68e-01 100.0% 67.0%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 55.0 4.50e-01 100.0% 51.5%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.66 55.0 4.02e-01 100.0% 62.8%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.66 54.0 3.54e-01 100.0% 21.0%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 51.0 5.22e-01 97.9% 93.3%
4jj0B00 2.30.42.60 Mainly Beta › Roll › Pdz3 Domain › 0.65 45.0 3.09e-01 74.5% 28.9%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 43.0 3.29e-01 85.1% 27.3%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 51.0 4.17e-01 93.6% 46.2%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.64 53.0 4.23e-01 100.0% 55.1%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.64 48.0 3.54e-01 85.1% 82.7%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 43.0 4.59e-01 70.2% 94.6%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.64 42.0 4.39e-01 72.3% 82.1%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 3.62e-01 87.2% 45.0%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 44.0 2.77e-01 85.1% 13.3%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.63 44.0 3.81e-01 76.6% 63.3%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.63 42.0 3.40e-01 72.3% 33.7%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 52.0 4.08e-01 97.9% 100.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 3.22e-01 76.6% 33.3%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.85e-01 83.0% 57.8%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 4.31e-01 83.0% 69.8%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.61 43.0 3.25e-01 76.6% 33.3%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.60 40.0 2.70e-01 70.2% 16.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 48.0 3.60e-01 93.6% 60.6%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 46.0 4.28e-01 97.9% 68.9%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 46.0 3.45e-01 87.2% 35.0%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.29e-01 83.0% 38.7%
4rcnA04 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.58 49.0 3.17e-01 100.0% 82.1%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.58 40.0 3.90e-01 74.5% 69.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 48.0 3.43e-01 97.9% 34.4%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 50.0 3.76e-01 100.0% 61.0%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.95e-01 97.9% 84.4%
1x0uA02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.58 48.0 3.07e-01 100.0% 76.3%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 48.0 3.65e-01 100.0% 38.6%
2x24A03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.57 48.0 2.90e-01 100.0% 69.8%
4l6wA02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.57 49.0 3.25e-01 100.0% 78.7%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.57 46.0 3.97e-01 91.5% 56.6%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.57 44.0 3.70e-01 91.5% 53.3%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 45.0 3.39e-01 95.7% 53.4%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.56 46.0 2.90e-01 100.0% 59.8%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.12e-01 83.0% 32.0%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 47.0 3.07e-01 100.0% 28.6%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 47.0 3.44e-01 100.0% 61.7%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 3.33e-01 95.7% 34.7%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.75e-01 91.5% 82.3%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 40.0 2.72e-01 87.2% 70.1%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 42.0 3.32e-01 93.6% 35.5%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.55 38.0 2.98e-01 95.7% 30.8%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.55 37.0 2.62e-01 72.3% 27.5%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 42.0 2.61e-01 97.9% 12.8%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 38.0 2.99e-01 76.6% 60.2%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 41.0 3.69e-01 89.4% 64.9%
2gy5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.65e-01 100.0% 80.8%
1wduB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.54 46.0 3.01e-01 100.0% 69.9%
2z0qA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.24e-01 93.6% 44.5%
6fgcA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.53 41.0 2.87e-01 91.5% 76.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.28e-01 80.9% 53.2%
1je0C00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 43.0 2.84e-01 100.0% 84.6%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.39e-01 100.0% 55.6%
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.23e-01 100.0% 53.9%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4393617 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.73 63.0 4.60e-01 100.0% 40.8%
5074419 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.72 59.0 5.38e-01 100.0% 69.2%
3286982 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.72 59.0 4.72e-01 100.0% 48.1%
3209694 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 57.0 4.62e-01 100.0% 45.0%
5066760 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.71 60.0 4.53e-01 100.0% 42.7%
4964131 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.70 59.0 3.92e-01 100.0% 23.1%
4269457 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.70 56.0 4.26e-01 100.0% 36.6%
4978348 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.69 58.0 4.87e-01 100.0% 76.5%
3420881 5.1.3.252 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF27637 0.69 44.0 4.85e-01 70.2% 88.6%
4939419 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.68 58.0 4.84e-01 100.0% 81.2%
5004264 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.68 54.0 4.23e-01 100.0% 40.7%
5001238 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 52.0 4.10e-01 100.0% 38.2%
3802643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 58.0 4.66e-01 100.0% 55.8%
4936961 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.67 51.0 4.31e-01 87.2% 50.6%
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.67 52.0 5.27e-01 97.9% 93.3%
None 0.66 52.0 2.91e-01 87.2% 7.9%
1731428 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.66 55.0 4.37e-01 100.0% 45.3%
3285858 2004.1.1.88 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW 0.65 54.0 3.53e-01 100.0% 22.9%
3611538 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.64 43.0 4.17e-01 70.2% 90.9%
5015520 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.64 48.0 3.16e-01 83.0% 29.0%
3998599 2003.1.3.27 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Amino_oxidase 0.64 46.0 2.67e-01 76.6% 50.8%
3175837 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 55.0 3.89e-01 100.0% 31.3%
3960039 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.63 45.0 2.92e-01 78.7% 89.6%
3386077 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.63 50.0 5.10e-01 95.7% 97.8%
3760469 2003.1.2.91 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, NAD_binding_8, Pyr_redox_3 0.63 45.0 2.56e-01 78.7% 6.9%
3517079 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.62 46.0 3.33e-01 83.0% 32.4%
3918879 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 3.27e-01 83.0% 29.3%
3925367 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 3.27e-01 83.0% 30.7%
3173787 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 3.45e-01 83.0% 50.8%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 42.0 3.51e-01 74.5% 41.1%
3998194 220.1.1.68 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_Tiam1 0.61 45.0 3.33e-01 83.0% 35.8%
5039029 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 46.0 3.94e-01 91.5% 47.8%
3744190 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.61 49.0 3.69e-01 91.5% 36.7%
3595799 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 3.11e-01 83.0% 27.6%
4946434 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.60 50.0 3.76e-01 100.0% 37.7%
3847592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 44.0 2.59e-01 83.0% 8.5%
3919705 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.60 44.0 2.60e-01 83.0% 10.1%
5044376 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.60 51.0 3.11e-01 100.0% 16.3%
3966067 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.59 43.0 2.70e-01 85.1% 13.3%
3937948 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.59 44.0 3.15e-01 83.0% 29.0%
4018795 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.59 44.0 3.31e-01 83.0% 38.7%
5791 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.59 45.0 3.40e-01 85.1% 65.5%
3582821 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.59 46.0 3.86e-01 91.5% 47.8%
3411956 394.1.1.1 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.58 41.0 3.83e-01 76.6% 74.6%
5061930 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.73e-01 91.5% 47.4%
3396305 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.58 41.0 3.83e-01 74.5% 62.7%
5045772 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.37e-01 95.7% 34.8%
3582577 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 3.20e-01 83.0% 50.0%
3560565 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.58 42.0 2.85e-01 83.0% 21.4%
4932845 169.1.1.1 alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.58 47.0 2.79e-01 95.7% 25.7%
4027686 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 49.0 4.75e-01 100.0% 89.1%
3887822 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.23e-01 83.0% 37.6%
3879653 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.57 42.0 3.80e-01 83.0% 55.7%
4341865 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.57 46.0 4.50e-01 100.0% 81.8%
3742074 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 45.0 3.39e-01 100.0% 32.4%
2043053 3414.1.1.1 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Big_3 0.57 45.0 3.88e-01 100.0% 70.0%
3798262 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.04e-01 83.0% 29.3%
4485741 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 44.0 2.47e-01 95.7% 6.0%
5050109 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.57 44.0 3.89e-01 100.0% 63.5%
3290300 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.57 45.0 3.91e-01 100.0% 58.8%
3591998 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.56 44.0 3.48e-01 91.5% 45.5%
4032084 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 45.0 3.78e-01 100.0% 49.5%
3925891 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.47e-01 83.0% 45.6%
3533362 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.56 46.0 3.16e-01 95.7% 26.1%
3271779 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.29e-01 97.9% 30.3%
3260099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.85e-01 100.0% 82.2%
3262415 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.50e-01 95.7% 38.3%
3390391 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 43.0 3.12e-01 91.5% 33.5%
3792405 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 46.0 2.64e-01 95.7% 8.7%
3796100 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 46.0 3.23e-01 95.7% 29.3%
3623534 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.38e-01 83.0% 51.1%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.97e-01 97.9% 73.3%
5052369 169.1.1.1 alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.54 43.0 2.59e-01 95.7% 28.0%
3241311 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 2.79e-01 85.1% 45.8%
3570970 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.53 40.0 2.80e-01 97.9% 23.8%
3244960 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 39.0 3.46e-01 85.1% 73.3%
3390929 394.1.1.0 few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.53 36.0 3.50e-01 78.7% 76.7%
3497738 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 39.0 2.97e-01 83.0% 33.1%
3730255 220.1.1.196 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SPO71 0.52 42.0 3.00e-01 95.7% 29.0%
3495619 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 39.0 3.06e-01 83.0% 38.2%
4955849 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 39.0 2.56e-01 83.0% 33.2%
3791851 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.09e-01 95.7% 44.1%
4003459 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.50 41.0 2.74e-01 100.0% 40.9%