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term4_saliva_scaffold_12_prodigal-single.1__X__X__00066

Bact-Vir

term4_saliva_scaffold_12_prodigal-single.1__X__X__00066

Identity

Kingdom:
phage

Quality

57.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 329-517
PDB
D2 high residues 538-693
PDB
D3 high residues 713-779
PDB
D4 medium residues 1-124
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oh3A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.55 44.0 2.88e-01 82.3% 41.0%
4bgpA01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.51 41.0 4.10e-01 100.0% 85.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3920202 601.16.1.15 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › CRIC_ras_sig 0.59 43.0 4.19e-01 77.4% 91.4%
3503503 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.57 41.0 3.96e-01 75.8% 84.8%
3534499 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.55 40.0 3.83e-01 75.0% 84.1%
3297656 601.1.2.68 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DUF1218 0.54 39.0 3.57e-01 75.8% 93.9%
3623607 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.53 39.0 3.76e-01 75.8% 81.4%
3367265 5069.1.1.55 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF1218 0.53 39.0 3.45e-01 76.6% 86.1%
D5 medium residues 125-322
PDB