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term4_saliva_scaffold_12_prodigal-single.1__X__X__00078

Bact-Vir

term4_saliva_scaffold_12_prodigal-single.1__X__X__00078

Identity

Kingdom:
phage

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-51
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.78 66.0 4.97e-01 94.0% 65.3%
3u2aA00 3.30.450.310 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.75 64.0 4.97e-01 98.0% 71.4%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.74 62.0 4.75e-01 96.0% 78.6%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.71 60.0 4.64e-01 100.0% 71.5%
1iftA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.70 50.0 3.48e-01 78.0% 43.1%
5ih0A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 62.0 5.00e-01 100.0% 91.4%
1nioA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.68 49.0 3.47e-01 78.0% 44.4%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 57.0 4.14e-01 100.0% 96.0%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 52.0 4.20e-01 96.0% 86.6%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 53.0 4.22e-01 100.0% 76.3%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 52.0 4.07e-01 96.0% 75.4%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 48.0 2.93e-01 82.0% 23.9%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 46.0 3.34e-01 80.0% 85.3%
6s6yD02 3.30.70.520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 51.0 3.60e-01 90.0% 90.7%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 51.0 4.39e-01 98.0% 96.6%
1vlrA01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.62 53.0 4.28e-01 96.0% 90.8%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 53.0 4.46e-01 98.0% 96.6%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.62 52.0 3.94e-01 100.0% 57.6%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 45.0 4.09e-01 94.0% 56.2%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 52.0 3.96e-01 100.0% 75.0%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 3.78e-01 96.0% 75.6%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.60 48.0 4.07e-01 100.0% 52.9%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 48.0 3.74e-01 100.0% 77.7%
2k5qA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.59 46.0 3.69e-01 86.0% 65.7%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 47.0 4.32e-01 90.0% 85.1%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.59 48.0 4.45e-01 100.0% 71.4%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 51.0 3.11e-01 100.0% 21.8%
3mfxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 47.0 3.82e-01 98.0% 75.4%
3r1kA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.57 45.0 3.73e-01 98.0% 46.9%
2yzhA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 44.0 3.29e-01 98.0% 88.8%
2o1uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 49.0 3.45e-01 100.0% 30.9%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 2.97e-01 100.0% 21.6%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.56 46.0 3.21e-01 100.0% 27.1%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.56 46.0 3.63e-01 100.0% 43.5%
3kebB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 42.0 3.12e-01 94.0% 88.4%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 43.0 2.70e-01 96.0% 60.3%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 41.0 3.72e-01 84.0% 76.1%
2oqhA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 39.0 3.16e-01 82.0% 83.3%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 45.0 4.05e-01 100.0% 77.3%
4it1B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 39.0 2.96e-01 84.0% 79.1%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 42.0 3.05e-01 94.0% 90.6%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 38.0 2.97e-01 86.0% 93.8%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.58e-01 100.0% 84.5%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.46e-01 82.0% 64.2%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.50 38.0 2.81e-01 94.0% 57.1%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3787201 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 62.0 5.00e-01 98.0% 69.4%
5002402 3153.1.1.0 ↗ a+b two layers › PipX › PipX › PipX 0.71 55.0 4.76e-01 84.0% 65.3%
3245986 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 57.0 3.69e-01 94.0% 40.4%
4571073 243.1.1.66 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcaA_5th 0.67 57.0 4.53e-01 98.0% 90.5%
3518369 11.1.4.92 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › VPS13_VAB 0.67 53.0 4.31e-01 94.0% 91.4%
4021395 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 58.0 3.54e-01 100.0% 25.2%
3967125 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 56.0 4.05e-01 100.0% 40.6%
3224154 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.65 55.0 3.35e-01 100.0% 22.9%
3291057 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 56.0 5.06e-01 100.0% 85.7%
4957055 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.65 56.0 4.95e-01 100.0% 77.3%
4930386 11.1.1.1395 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HcyBio 0.63 49.0 4.06e-01 90.0% 88.0%
4002884 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 52.0 3.66e-01 96.0% 43.0%
5052517 11.1.1.1395 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HcyBio 0.63 49.0 4.04e-01 90.0% 88.0%
230344 3188.1.1.1 ↗ beta duplicates or obligate multimers › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) › SBD 0.63 52.0 3.37e-01 100.0% 28.6%
4929480 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.62 52.0 3.81e-01 100.0% 65.2%
2452960 520.1.1.0 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related 0.62 52.0 4.43e-01 100.0% 62.2%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 48.0 4.62e-01 90.0% 90.0%
4941547 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.62 51.0 4.08e-01 92.0% 93.0%
3872362 385.1.1.0 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines 0.62 47.0 4.19e-01 86.0% 74.7%
3895024 385.1.1.8 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › DAN 0.61 46.0 3.86e-01 86.0% 80.0%
4030906 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 52.0 3.98e-01 100.0% 78.4%
3240037 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 49.0 3.22e-01 90.0% 62.7%
3720627 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 51.0 3.06e-01 100.0% 17.8%
3596677 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 47.0 4.03e-01 94.0% 86.3%
5014399 206.1.1.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.60 53.0 3.45e-01 100.0% 46.1%
4261091 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 47.0 3.68e-01 94.0% 62.8%
3787501 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 45.0 3.32e-01 82.0% 98.6%
4191162 385.1.1.1 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot 0.60 45.0 3.91e-01 86.0% 81.2%
3268156 223.2.1.4 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN 0.60 50.0 3.47e-01 98.0% 47.0%
4978599 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 50.0 3.05e-01 100.0% 17.3%
3621436 385.1.1.2 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › TGF_beta 0.59 45.0 3.59e-01 84.0% 84.6%
4937589 243.4.1.0 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.59 49.0 4.58e-01 98.0% 73.8%
4448455 385.1.1.1 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot 0.59 45.0 3.94e-01 86.0% 83.7%
1005445 243.11.1.1 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › DUF4651 0.59 48.0 4.45e-01 100.0% 71.4%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 47.0 4.17e-01 96.0% 68.8%
5065184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.48e-01 86.0% 91.1%
4044630 385.1.1.8 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › DAN 0.57 43.0 3.57e-01 86.0% 66.0%
4978331 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.56 44.0 4.13e-01 96.0% 71.4%
3266713 3264.1.1.0 ↗ 0.56 45.0 3.39e-01 100.0% 36.7%
3667875 67.1.1.0 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.56 47.0 4.58e-01 96.0% 98.2%
4062936 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.55 40.0 3.32e-01 80.0% 87.6%
3311774 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 46.0 4.74e-01 96.0% 95.8%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.54 43.0 3.93e-01 94.0% 65.7%
4003008 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 44.0 2.77e-01 94.0% 40.3%
163477 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 38.0 3.15e-01 82.0% 84.2%
3260570 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.31e-01 82.0% 72.2%
162823 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 38.0 3.06e-01 82.0% 86.3%
4966092 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 44.0 3.30e-01 94.0% 44.4%
4965513 331.19.1.5 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › DUF5784 0.52 44.0 3.56e-01 100.0% 50.5%
3845293 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.52 44.0 3.37e-01 96.0% 44.0%
3388982 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.52 45.0 3.49e-01 100.0% 66.1%
3703649 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.52 43.0 3.79e-01 100.0% 63.7%
3707862 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.51 42.0 3.72e-01 100.0% 63.7%
4023351 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.51 42.0 3.08e-01 96.0% 50.0%
3497128 385.1.1.0 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines 0.51 38.0 3.15e-01 84.0% 92.0%
3257071 236.1.1.0 ↗ beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.50 41.0 3.07e-01 100.0% 60.7%