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term4_saliva_scaffold_12_prodigal-single.1__X__X__00133
Bact-Virterm4_saliva_scaffold_12_prodigal-single.1__X__X__00133
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-130
Domain cluster:
rep: MK448585.1__QBX12008.1__JavanS625_0002__00014__D2-144
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08797.17 best | HIRAN | 35.2 | 1.20e-08 | 95.5% | 54.2% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.64 | 36.0 | 4.44e-01 | 100.0% | 92.4% |
| 7dl8C01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.63 | 32.0 | 3.51e-01 | 100.0% | 59.6% |
| 3drxB03 | 3.30.70.2000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 30.0 | 4.14e-01 | 100.0% | 100.0% |
| 2yqzA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 33.0 | 2.79e-01 | 100.0% | 30.1% |
| 1fp5A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 33.0 | 3.45e-01 | 100.0% | 57.0% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.59 | 33.0 | 4.02e-01 | 100.0% | 88.2% |
| 2efjA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 32.0 | 2.54e-01 | 100.0% | 27.1% |
| 2oa9B02 | 3.30.70.3570 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain | 0.58 | 52.0 | 5.01e-01 | 99.1% | 97.6% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.58 | 29.0 | 3.12e-01 | 100.0% | 52.5% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.57 | 32.0 | 3.95e-01 | 100.0% | 92.2% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.57 | 32.0 | 3.54e-01 | 100.0% | 67.4% |
| 2w8eA00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.57 | 37.0 | 3.05e-01 | 99.1% | 36.0% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 29.0 | 3.16e-01 | 100.0% | 57.8% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.56 | 30.0 | 3.21e-01 | 100.0% | 58.1% |
| 1el6A02 | 2.20.20.20 | Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain | 0.55 | 25.0 | 3.34e-01 | 100.0% | 91.5% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 30.0 | 3.65e-01 | 75.9% | 84.5% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.54 | 33.0 | 3.37e-01 | 100.0% | 59.3% |
| 6qdwt00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 31.0 | 3.37e-01 | 100.0% | 66.7% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.54 | 31.0 | 3.37e-01 | 100.0% | 67.8% |
| 6efyA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 29.0 | 3.06e-01 | 100.0% | 59.2% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.52 | 32.0 | 3.51e-01 | 100.0% | 74.5% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 27.0 | 2.88e-01 | 100.0% | 56.2% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 27.0 | 3.21e-01 | 98.2% | 74.0% |
| 1rhfA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 25.0 | 2.74e-01 | 100.0% | 50.5% |
| 3l4gC01 | 3.30.1370.240 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.51 | 29.0 | 3.06e-01 | 100.0% | 60.0% |
| 5xoyB02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 34.0 | 3.48e-01 | 100.0% | 72.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3330336 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.83 | 69.0 | 6.71e-01 | 100.0% | 81.7% |
| 3310707 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.82 | 67.0 | 6.37e-01 | 99.1% | 74.6% |
| 3828376 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.77 | 60.0 | 5.67e-01 | 100.0% | 70.0% |
| 3334834 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.76 | 62.0 | 6.45e-01 | 100.0% | 94.2% |
| 4002415 | 389.2.1.3 ↗ | few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors › TIL_2 | 0.71 | 30.0 | 3.95e-01 | 100.0% | 69.2% |
| 4342249 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.69 | 63.0 | 5.88e-01 | 100.0% | 82.2% |
| 4417915 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.68 | 33.0 | 3.72e-01 | 100.0% | 57.8% |
| 4372260 | 3468.1.1.1 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN | 0.68 | 63.0 | 5.81e-01 | 100.0% | 83.6% |
| 3654579 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.67 | 60.0 | 4.96e-01 | 100.0% | 62.6% |
| 4061575 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.66 | 32.0 | 3.59e-01 | 100.0% | 56.7% |
| 4932802 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.65 | 34.0 | 2.86e-01 | 99.1% | 30.0% |
| 3387365 | 872.8.1.0 ↗ | a+b two layers › Dodecin subunit-like › Probable RNA-binding protein N-terminal domain › Probable RNA-binding protein N-terminal domain | 0.65 | 33.0 | 4.18e-01 | 100.0% | 83.1% |
| 4999152 | 872.1.1.2 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin | 0.64 | 36.0 | 4.40e-01 | 100.0% | 88.4% |
| 5064481 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.63 | 41.0 | 3.76e-01 | 100.0% | 48.7% |
| None | — | 0.63 | 33.0 | 3.48e-01 | 100.0% | 56.0% | |
| 3537229 | 310.3.1.21 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › HNOB | 0.63 | 36.0 | 3.72e-01 | 100.0% | 59.0% |
| 3687652 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.60 | 36.0 | 4.33e-01 | 100.0% | 94.3% |
| 4401392 | 872.1.1.2 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin | 0.59 | 32.0 | 4.00e-01 | 100.0% | 89.2% |
| 4127809 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.59 | 32.0 | 3.57e-01 | 100.0% | 65.2% |
| 4927441 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.58 | 36.0 | 4.00e-01 | 100.0% | 77.8% |
| 3760913 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.57 | 32.0 | 3.08e-01 | 100.0% | 47.2% |
| 4981531 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 31.0 | 2.91e-01 | 98.2% | 41.5% |
| 3972051 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 32.0 | 3.04e-01 | 100.0% | 45.4% |
| 5013821 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.56 | 32.0 | 3.19e-01 | 100.0% | 50.0% |
| 3495236 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.56 | 33.0 | 3.63e-01 | 100.0% | 71.1% |
| 4467967 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.55 | 47.0 | 3.49e-01 | 93.8% | 85.6% |
| 3972904 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.55 | 30.0 | 3.18e-01 | 93.8% | 57.0% |
| 3500525 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.55 | 39.0 | 3.38e-01 | 100.0% | 48.2% |
| 3586038 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.54 | 31.0 | 2.86e-01 | 100.0% | 40.7% |
| 3176281 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.54 | 33.0 | 3.87e-01 | 86.6% | 90.7% |
| 3933746 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 31.0 | 3.09e-01 | 100.0% | 52.5% |
| 4994514 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.53 | 33.0 | 3.55e-01 | 100.0% | 71.6% |
| 3587889 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.53 | 32.0 | 2.62e-01 | 100.0% | 32.5% |
| 4202370 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.53 | 28.0 | 3.02e-01 | 98.2% | 57.0% |
| 984477 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.50 | 32.0 | 3.42e-01 | 100.0% | 72.7% |