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term4_saliva_scaffold_12_prodigal-single.1__X__X__00157
Bact-Virterm4_saliva_scaffold_12_prodigal-single.1__X__X__00157
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-129
Domain cluster:
rep: LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00035__D6-122
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.55 | 44.0 | 4.32e-01 | 84.3% | 83.8% |
| 6mw4A01 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 28.0 | 2.84e-01 | 80.3% | 45.4% |
| 4feuF01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 19.0 | 2.53e-01 | 85.0% | 57.5% |
| 1vi7A01 | 3.30.230.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain | 0.52 | 30.0 | 3.00e-01 | 77.2% | 52.6% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.52 | 39.0 | 4.08e-01 | 92.1% | 85.2% |
| 5xogK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.51 | 38.0 | 4.02e-01 | 91.3% | 85.8% |
| 3mixA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.51 | 30.0 | 3.09e-01 | 79.5% | 58.3% |
| 4g59C01 | 2.60.40.2920 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 3.87e-01 | 81.9% | 86.4% |
| 6ruiK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.51 | 39.0 | 4.31e-01 | 90.6% | 98.1% |
| 4aybL00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.51 | 35.0 | 4.07e-01 | 94.5% | 98.9% |
| 1qw9A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 28.0 | 2.76e-01 | 80.3% | 48.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3951937 | 330.8.1.1 ↗ | a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like | 0.81 | 49.0 | 5.83e-01 | 85.0% | 86.5% |
| 3787819 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.61 | 35.0 | 3.88e-01 | 73.2% | 68.6% |
| 3693642 | 212.1.1.45 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV, EFL1 | 0.58 | 37.0 | 3.07e-01 | 72.4% | 34.5% |
| 3636688 | 881.1.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 | 0.57 | 39.0 | 3.46e-01 | 84.3% | 48.9% |
| 5008353 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.55 | 40.0 | 4.10e-01 | 78.7% | 79.2% |
| 1790181 | 331.22.1.2 ↗ | a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 | 0.54 | 46.0 | 3.88e-01 | 89.8% | 69.0% |
| 4028607 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.52 | 39.0 | 4.14e-01 | 94.5% | 89.1% |
| 3655967 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 37.0 | 4.18e-01 | 85.0% | 97.9% |
| 3641364 | 7504.1.1.3 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf | 0.52 | 40.0 | 3.95e-01 | 83.5% | 94.3% |
| 3808070 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.51 | 30.0 | 3.01e-01 | 70.9% | 55.4% |
| 3609079 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 34.0 | 3.30e-01 | 76.4% | 60.0% |
| 4953493 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 33.0 | 3.94e-01 | 78.7% | 100.0% |