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term4_saliva_scaffold_12_prodigal-single.1__X__X__00190
Bact-Virterm4_saliva_scaffold_12_prodigal-single.1__X__X__00190
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-79_100-202_286-303
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mlgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 22.0 | 2.97e-01 | 83.4% | 55.8% |
| 1wg1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 23.0 | 3.22e-01 | 76.8% | 74.6% |
| 4pswA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 31.0 | 3.36e-01 | 86.1% | 59.4% |
| 3fhdA01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.53 | 33.0 | 3.50e-01 | 95.4% | 68.4% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 30.0 | 3.50e-01 | 77.5% | 80.6% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.51 | 29.0 | 3.47e-01 | 86.8% | 85.3% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 27.0 | 3.48e-01 | 78.1% | 88.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1146763 | 101.1.2.72 ↗ | alpha arrays › HTH › HTH › winged helix domain › Sulfolobus_pRN | 0.64 | 22.0 | 2.97e-01 | 83.4% | 55.8% |
| 3979740 | 601.1.2.143 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PF31092 | 0.59 | 39.0 | 4.43e-01 | 94.0% | 90.9% |
| 3940850 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 26.0 | 3.52e-01 | 92.1% | 81.3% |
| 5077919 | 101.1.2.143 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_34 | 0.57 | 33.0 | 3.92e-01 | 82.1% | 85.0% |
| 4520138 | 328.3.1.2 ↗ | a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 | 0.55 | 27.0 | 2.98e-01 | 98.0% | 58.3% |
| 4297401 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.55 | 24.0 | 3.14e-01 | 87.4% | 73.8% |
| 4938255 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 28.0 | 3.62e-01 | 94.7% | 91.3% |
| 3634662 | 327.11.2.19 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_11 | 0.54 | 28.0 | 3.51e-01 | 100.0% | 83.3% |
| 4626094 | 2003.1.5.25 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB | 0.54 | 31.0 | 2.84e-01 | 77.5% | 43.1% |
| 2409292 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.51 | 32.0 | 3.75e-01 | 84.1% | 89.4% |
| 3964741 | 101.1.2.368 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_36 | 0.51 | 33.0 | 3.94e-01 | 84.8% | 98.0% |
| 3515401 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 29.0 | 3.22e-01 | 78.1% | 69.2% |
| 5008586 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.50 | 30.0 | 3.67e-01 | 98.7% | 92.6% |
| 5077595 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 30.0 | 3.49e-01 | 78.1% | 81.8% |
| 3944118 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 27.0 | 3.28e-01 | 77.5% | 83.3% |
D2
medium
residues 30-49_80-99_203-285