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term4_saliva_scaffold_12_prodigal-single.1__X__X__00200
Bact-Virterm4_saliva_scaffold_12_prodigal-single.1__X__X__00200
Identity
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-54_181-256
Domain cluster:
rep: term4_saliva_scaffold_12_prodigal-single.1__X__X__00057__D13-44_163-253
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.69 | 45.0 | 5.23e-01 | 89.4% | 93.3% |
| 1dd5A02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.67 | 46.0 | 5.28e-01 | 71.2% | 97.3% |
| 2r01A01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 44.0 | 3.93e-01 | 72.1% | 85.6% |
| 7xhzA01 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.61 | 43.0 | 4.12e-01 | 73.1% | 100.0% |
| 1nrwA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.61 | 42.0 | 3.93e-01 | 71.2% | 100.0% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 43.0 | 3.20e-01 | 73.1% | 85.8% |
| 3ialA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 43.0 | 3.16e-01 | 73.1% | 77.2% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.59 | 41.0 | 4.51e-01 | 72.1% | 96.3% |
| 2bvfA03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.58 | 48.0 | 3.87e-01 | 91.3% | 95.7% |
| 2nryD01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 40.0 | 4.19e-01 | 79.8% | 79.3% |
| 4on1A01 | 2.40.128.470 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 42.0 | 3.81e-01 | 100.0% | 56.8% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.57 | 44.0 | 4.14e-01 | 83.7% | 95.4% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.55 | 38.0 | 4.28e-01 | 72.1% | 93.7% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 48.0 | 3.82e-01 | 94.2% | 88.3% |
| 2x7gA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 38.0 | 4.06e-01 | 77.9% | 83.0% |
| 4fg9A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 34.0 | 3.87e-01 | 77.9% | 83.5% |
| 3vwaA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 37.0 | 4.00e-01 | 77.9% | 83.3% |
| 5jd5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 39.0 | 2.78e-01 | 78.8% | 82.0% |
| 4g59C01 | 2.60.40.2920 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.65e-01 | 93.3% | 72.8% |
| 3lwsF02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 33.0 | 3.37e-01 | 73.1% | 65.4% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4669668 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.69 | 50.0 | 5.10e-01 | 87.5% | 78.0% |
| 4978264 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.68 | 48.0 | 4.82e-01 | 73.1% | 71.4% |
| 4071991 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.67 | 49.0 | 3.96e-01 | 86.5% | 42.2% |
| 4138504 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.64 | 48.0 | 3.91e-01 | 86.5% | 43.8% |
| 4339024 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.64 | 43.0 | 4.88e-01 | 71.2% | 94.7% |
| 4033780 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.64 | 45.0 | 4.15e-01 | 72.1% | 100.0% |
| 5013026 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.63 | 51.0 | 4.33e-01 | 86.5% | 84.1% |
| 3970104 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.63 | 44.0 | 4.86e-01 | 71.2% | 97.5% |
| 3609850 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.63 | 46.0 | 3.69e-01 | 87.5% | 39.0% |
| 3595902 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.63 | 46.0 | 3.71e-01 | 87.5% | 40.0% |
| 3961786 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.63 | 48.0 | 3.93e-01 | 90.4% | 44.9% |
| 4172304 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.63 | 46.0 | 3.36e-01 | 76.0% | 53.7% |
| 4460268 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.63 | 48.0 | 3.85e-01 | 86.5% | 43.2% |
| 4203622 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.63 | 49.0 | 4.06e-01 | 90.4% | 48.6% |
| 3270632 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.63 | 46.0 | 3.77e-01 | 86.5% | 42.6% |
| 4094836 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.62 | 47.0 | 3.89e-01 | 87.5% | 45.6% |
| 4569063 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.61 | 45.0 | 3.36e-01 | 76.0% | 49.8% |
| 4277035 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.61 | 42.0 | 4.75e-01 | 72.1% | 96.2% |
| 3164849 | 3016.1.1.11 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA | 0.61 | 46.0 | 4.63e-01 | 83.7% | 79.0% |
| 4010106 | 3012.1.1.4 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Hydrolase_3 | 0.60 | 41.0 | 4.09e-01 | 70.2% | 100.0% |
| 3941592 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.60 | 41.0 | 4.07e-01 | 70.2% | 100.0% |
| 3981523 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.60 | 43.0 | 3.22e-01 | 75.0% | 57.7% |
| 4091857 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.59 | 41.0 | 3.86e-01 | 72.1% | 60.8% |
| 4009838 | 310.3.1.4 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C | 0.59 | 41.0 | 4.57e-01 | 72.1% | 97.5% |
| 5052421 | 305.1.1.2 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 | 0.57 | 36.0 | 3.75e-01 | 97.1% | 68.4% |
| 4940667 | 881.3.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Outer membrane-associated lipoprotein TP0453 › Outer membrane-associated lipoprotein TP0453 | 0.54 | 48.0 | 3.46e-01 | 97.1% | 73.1% |
| 4390550 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.52 | 33.0 | 3.33e-01 | 96.2% | 62.9% |
| 4679680 | 312.1.1.12 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › DUF4931_C | 0.51 | 37.0 | 3.76e-01 | 77.9% | 87.6% |
| 5008353 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.50 | 36.0 | 3.49e-01 | 84.6% | 65.0% |
D2
high
residues 58-172
Domain cluster:
rep: term4_saliva_scaffold_12_prodigal-single.1__X__X__00057__D46-159
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.61 | 42.0 | 3.86e-01 | 70.4% | 74.7% |
| 2p12A01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.60 | 41.0 | 3.66e-01 | 87.8% | 48.4% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.58 | 46.0 | 3.99e-01 | 86.1% | 56.0% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.57 | 45.0 | 3.09e-01 | 84.3% | 85.5% |
| 1ksiA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.56 | 45.0 | 3.08e-01 | 86.1% | 86.3% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.56 | 39.0 | 4.19e-01 | 81.7% | 83.8% |
| 1d6uA03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.56 | 45.0 | 3.07e-01 | 86.1% | 87.8% |
| 2lmeA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.55 | 34.0 | 3.62e-01 | 91.3% | 68.6% |
| 1n9eA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.55 | 43.0 | 2.88e-01 | 85.2% | 69.4% |
| 1swgC00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.54 | 46.0 | 4.48e-01 | 90.4% | 84.1% |
| 1pzdA01 | 2.60.40.1480 | Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain | 0.54 | 40.0 | 3.68e-01 | 78.3% | 84.6% |
| 3f8xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 40.0 | 3.81e-01 | 98.3% | 66.7% |
| 2d73A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.53 | 45.0 | 3.34e-01 | 90.4% | 81.3% |
| 3fyfA00 | 2.40.128.410 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 46.0 | 4.24e-01 | 97.4% | 73.2% |
| 4mp8A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.52 | 46.0 | 4.18e-01 | 99.1% | 89.4% |
| 3gekA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 40.0 | 3.86e-01 | 82.6% | 97.7% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.52 | 46.0 | 4.24e-01 | 98.3% | 85.9% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.76e-01 | 98.3% | 70.3% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 38.0 | 3.80e-01 | 80.9% | 95.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.68 | 45.0 | 5.35e-01 | 71.3% | 97.5% |
| 3612141 | 719.1.1.5 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 | 0.60 | 46.0 | 4.38e-01 | 81.7% | 100.0% |
| 3318685 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.58 | 38.0 | 3.99e-01 | 82.6% | 72.4% |
| 3233389 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.57 | 48.0 | 3.35e-01 | 92.2% | 96.3% |
| 3591146 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.56 | 46.0 | 3.46e-01 | 88.7% | 87.1% |
| 3074009 | 9.1.1.31 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › VtrC | 0.55 | 40.0 | 3.85e-01 | 87.8% | 65.4% |
| 3928712 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.54 | 43.0 | 3.32e-01 | 83.5% | 68.8% |
| 3183221 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.54 | 43.0 | 3.28e-01 | 84.3% | 70.2% |
| 3740154 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.53 | 42.0 | 3.28e-01 | 84.3% | 73.5% |
| 3185089 | 9.1.1.37 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 | 0.52 | 44.0 | 3.72e-01 | 91.3% | 86.4% |
| 2485676 | 292.3.1.1 ↗ | a+b two layers › RIP/Polo-box domain › TipC soluble domain › TipC soluble domain › TipC | 0.51 | 42.0 | 3.63e-01 | 89.6% | 68.1% |
| 3640072 | 12.3.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid | 0.51 | 42.0 | 2.80e-01 | 88.7% | 75.6% |