Back to structures

term4_saliva_scaffold_12_prodigal-single.1__X__X__00234

Bact-Vir

term4_saliva_scaffold_12_prodigal-single.1__X__X__00234

Identity

Kingdom:
phage

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-129
PDB
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.68 32.0 4.29e-01 80.2% 87.3%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 47.0 4.45e-01 70.6% 85.0%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.67 48.0 4.63e-01 75.4% 66.4%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.66 41.0 4.36e-01 72.2% 69.9%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.65 46.0 4.91e-01 73.8% 83.6%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.65 48.0 4.63e-01 75.4% 81.3%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 44.0 4.27e-01 70.6% 84.6%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.64 44.0 3.66e-01 70.6% 61.3%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 46.0 3.76e-01 76.2% 73.2%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.62 47.0 4.52e-01 78.6% 76.4%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 49.0 4.55e-01 81.7% 83.7%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 44.0 4.07e-01 73.8% 80.0%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 44.0 4.23e-01 73.0% 82.1%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.61 39.0 4.27e-01 72.2% 78.4%
2w3xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 38.0 3.67e-01 92.1% 54.9%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 43.0 4.15e-01 73.8% 83.1%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 42.0 4.03e-01 71.4% 83.3%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.59 43.0 4.18e-01 75.4% 81.4%
4rljA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 36.0 3.47e-01 92.1% 52.8%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 42.0 3.98e-01 73.8% 82.9%
2k5gA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 45.0 4.01e-01 81.0% 97.2%
4mnrA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 43.0 3.27e-01 81.7% 76.3%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 4.18e-01 82.5% 86.3%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.56 44.0 4.23e-01 83.3% 93.2%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 45.0 3.44e-01 90.5% 77.3%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 42.0 3.12e-01 81.7% 74.6%
3nreA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 44.0 3.40e-01 88.1% 85.6%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 31.0 3.86e-01 77.0% 91.1%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 37.0 4.00e-01 91.3% 84.0%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 4.27e-01 92.9% 89.2%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 4.01e-01 79.4% 91.6%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 38.0 2.66e-01 75.4% 97.6%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 36.0 3.91e-01 80.2% 88.5%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 35.0 3.26e-01 77.0% 56.1%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.99e-01 77.8% 87.5%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 36.0 3.81e-01 86.5% 81.4%
2wuqB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 41.0 3.24e-01 90.5% 80.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280926 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.68 55.0 4.91e-01 85.7% 91.4%
1491977 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.68 55.0 4.85e-01 84.9% 88.7%
4941093 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.67 50.0 4.72e-01 77.0% 74.0%
3303563 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.67 49.0 4.50e-01 75.4% 70.0%
5073891 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.67 42.0 4.71e-01 73.8% 80.0%
5038083 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.67 43.0 4.39e-01 71.4% 66.1%
4966638 881.1.1.44 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.67 52.0 4.42e-01 81.0% 76.4%
5009503 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.66 46.0 4.49e-01 71.4% 85.7%
3962603 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 47.0 4.97e-01 72.2% 89.1%
3278991 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.66 49.0 4.48e-01 80.2% 59.4%
4977517 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 33.0 4.04e-01 88.9% 77.3%
5026249 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.66 35.0 2.69e-01 90.5% 22.5%
4486484 2004.1.1.799 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_27, AAA_29 0.66 35.0 2.59e-01 90.5% 19.7%
4165476 2004.1.1.799 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_27, AAA_29 0.65 34.0 2.32e-01 90.5% 13.4%
3886734 331.4.1.7 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 0.65 47.0 4.27e-01 74.6% 59.4%
5029047 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 47.0 4.47e-01 75.4% 74.0%
3725129 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.65 43.0 4.06e-01 81.0% 55.5%
5034702 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 49.0 4.60e-01 77.8% 71.8%
5081617 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 34.0 2.46e-01 90.5% 17.7%
2516709 881.1.1.6 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN 0.64 52.0 4.72e-01 86.5% 91.9%
3290484 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 47.0 4.23e-01 76.2% 68.0%
5053256 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.64 43.0 4.33e-01 71.4% 68.0%
2410020 881.1.1.4 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DcrB 0.64 55.0 5.17e-01 90.5% 77.0%
6329 331.3.1.10 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AtaL 0.64 44.0 4.25e-01 71.4% 82.2%
3966459 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 47.0 4.54e-01 77.0% 77.9%
5047426 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.63 42.0 4.42e-01 70.6% 73.9%
3742949 331.9.1.1 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Alpha_adaptin_C 0.62 40.0 4.18e-01 71.4% 69.5%
5004871 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.62 37.0 4.37e-01 71.4% 84.4%
5011158 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.62 43.0 4.15e-01 71.4% 84.0%
4965879 881.1.1.44 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.62 47.0 4.08e-01 78.6% 66.5%
4992003 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.62 44.0 4.33e-01 73.8% 84.4%
4984404 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.61 44.0 4.16e-01 73.8% 85.1%
6333 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.61 43.0 4.16e-01 73.8% 83.7%
5010189 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.61 42.0 4.09e-01 70.6% 84.2%
5047424 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.61 42.0 4.29e-01 70.6% 73.3%
5009761 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.60 43.0 4.16e-01 73.8% 89.0%
3913070 331.4.1.3 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor 0.60 36.0 4.13e-01 75.4% 83.0%
3973638 331.10.1.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase 0.60 45.0 3.71e-01 79.4% 61.1%
5047928 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.60 42.0 4.30e-01 71.4% 75.0%
4978676 295.1.1.1 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 0.59 30.0 3.65e-01 88.1% 75.0%
9393 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.59 42.0 3.41e-01 73.0% 93.9%
6334 331.3.1.7 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.59 42.0 4.03e-01 73.8% 85.7%
4928436 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 51.0 4.84e-01 92.1% 80.0%
3281686 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.58 43.0 4.01e-01 78.6% 81.8%
None 0.58 40.0 2.66e-01 78.6% 18.4%
6336 331.13.1.1 a+b two layers › TBP-like › YwmB-like › YwmB-like › DUF1779 0.58 43.0 3.68e-01 77.8% 56.1%
3663339 331.4.1.7 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DUF1499 0.58 41.0 3.87e-01 73.8% 70.3%
4043495 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 41.0 3.77e-01 73.8% 93.3%
73522 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.57 39.0 4.18e-01 77.8% 81.7%
3429047 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.55 42.0 3.25e-01 81.0% 97.3%
3513651 331.9.1.8 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 0.55 41.0 4.40e-01 88.1% 88.2%
4050475 331.9.1.1 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Alpha_adaptin_C 0.55 42.0 4.26e-01 85.7% 81.3%
5064859 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.54 38.0 3.12e-01 73.0% 94.2%
3391086 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 39.0 2.60e-01 75.4% 21.2%
3660920 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.52 37.0 3.69e-01 74.6% 70.4%
5046054 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 40.0 4.15e-01 86.5% 84.2%
4973785 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.52 37.0 3.93e-01 75.4% 97.4%
3362831 3186.1.1.0 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.51 38.0 3.80e-01 96.0% 74.6%
5008544 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 37.0 3.82e-01 73.8% 94.8%
4627726 814.1.1.2 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase 0.51 44.0 4.01e-01 92.1% 99.4%
5044942 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 39.0 4.21e-01 86.5% 95.2%
3935896 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 40.0 3.97e-01 91.3% 80.0%
3582164 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 2.97e-01 81.0% 49.3%
4310932 12.3.1.24 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.50 42.0 3.42e-01 92.9% 84.7%
3968293 71.2.1.3 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › DUF3108 0.50 38.0 3.26e-01 81.0% 95.2%
3177232 331.9.1.4 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla 0.50 40.0 4.20e-01 89.7% 93.0%