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term4_saliva_scaffold_1_prodigal-single.1__X__X__00003

Bact-Vir

term4_saliva_scaffold_1_prodigal-single.1__X__X__00003

Identity

Kingdom:
phage

Quality

77.2 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 134-287
PDB
Domain cluster: rep: js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00148__D63-262
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04203.19 best Sortase 29.9 5.60e-07 85.7% 84.8%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.89 72.0 6.26e-01 100.0% 59.1%
2w1jA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.88 71.0 6.45e-01 100.0% 65.1%
4d70A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.88 68.0 6.77e-01 100.0% 76.9%
2w1kA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.87 69.0 6.16e-01 100.0% 61.1%
2kw8A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.85 66.0 6.54e-01 100.0% 77.8%
2ln7A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.82 64.0 6.63e-01 100.0% 85.0%
1t2pA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.79 65.0 6.69e-01 100.0% 90.3%
3psqB00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.71 68.0 6.34e-01 100.0% 90.1%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.63 27.0 3.93e-01 98.7% 92.2%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.57 32.0 3.56e-01 100.0% 69.0%
4itjB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 32.0 4.18e-01 74.0% 98.9%
5xd6B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 34.0 4.23e-01 75.3% 97.9%
3ub0A02 3.30.70.3540 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nsp8 replicase, head domain 0.50 30.0 3.69e-01 98.1% 98.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4586448 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.90 70.0 6.65e-01 100.0% 69.7%
4953572 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.89 67.0 7.17e-01 100.0% 87.4%
4344990 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.89 54.0 6.70e-01 76.6% 94.0%
1566317 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.88 68.0 6.77e-01 100.0% 76.9%
3589952 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.87 72.0 6.70e-01 100.0% 71.4%
4033467 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.86 71.0 6.65e-01 100.0% 72.8%
3503399 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.82 69.0 7.20e-01 100.0% 93.7%
2034294 290.1.1.1 ↗ beta barrels › Sortase › Sortase › Sortase › Sortase 0.80 70.0 6.56e-01 100.0% 77.8%
4952430 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 41.0 4.74e-01 100.0% 88.2%
4952429 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 40.0 4.75e-01 100.0% 95.0%
4889788 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 38.0 4.62e-01 99.4% 96.9%
D2 medium residues 48-107
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.63 42.0 2.77e-01 70.0% 21.0%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.60 40.0 3.79e-01 70.0% 88.2%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 38.0 3.00e-01 70.0% 84.9%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.57 48.0 3.65e-01 100.0% 85.5%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 2.95e-01 90.0% 89.2%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.08e-01 100.0% 86.4%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 38.0 3.90e-01 80.0% 96.4%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 35.0 2.84e-01 73.3% 36.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483269 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.63 47.0 4.49e-01 96.7% 68.6%
3403820 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.60 44.0 4.27e-01 96.7% 68.6%
4172592 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.55 42.0 3.88e-01 85.0% 77.5%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.54 37.0 3.82e-01 90.0% 78.2%
4433757 3347.1.1.3 ↗ beta meanders › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › Uncharacterized protein BF3112 › RHS_repeat, DUF6531 0.53 44.0 2.69e-01 98.3% 23.3%
3534484 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.52 42.0 3.02e-01 98.3% 84.7%
4888050 3398.1.1.1 ↗ a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 0.51 36.0 2.92e-01 73.3% 81.0%
3415237 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 33.0 2.40e-01 71.7% 19.5%