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term4_saliva_scaffold_1_prodigal-single.1__X__X__00004
Bact-Virterm4_saliva_scaffold_1_prodigal-single.1__X__X__00004
Identity
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-170
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.66 | 44.0 | 5.20e-01 | 76.0% | 100.0% |
| 6oh6A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.65 | 45.0 | 3.31e-01 | 71.1% | 82.6% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.64 | 37.0 | 4.30e-01 | 100.0% | 79.5% |
| 2pusA05 | 1.10.1740.80 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.63 | 32.0 | 3.77e-01 | 70.2% | 71.2% |
| 7q37A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.61 | 43.0 | 3.54e-01 | 73.6% | 40.7% |
| 2q37A00 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.61 | 34.0 | 3.26e-01 | 86.0% | 45.8% |
| 1n5uA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.61 | 42.0 | 4.54e-01 | 71.1% | 95.1% |
| 3n3wA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.60 | 45.0 | 4.27e-01 | 78.5% | 75.7% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.59 | 42.0 | 3.94e-01 | 73.6% | 64.7% |
| 3s0xA01 | 1.20.120.1220 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 43.0 | 4.09e-01 | 100.0% | 63.3% |
| 1e9rA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.57 | 41.0 | 4.26e-01 | 90.1% | 79.6% |
| 5z7cA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.56 | 39.0 | 3.42e-01 | 71.1% | 84.1% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.55 | 40.0 | 3.96e-01 | 95.9% | 71.9% |
| 3dpjF00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 40.0 | 3.47e-01 | 76.0% | 91.5% |
| 4ys0A02 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.54 | 41.0 | 3.69e-01 | 80.2% | 100.0% |
| 1dc1A02 | 1.10.238.90 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Restriction endonuclease BsobI, helical domain | 0.53 | 32.0 | 3.66e-01 | 87.6% | 81.8% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 48.0 | 4.15e-01 | 100.0% | 74.1% |
| 4lrvF00 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.52 | 38.0 | 4.05e-01 | 74.4% | 98.1% |
| 2y0nC00 | 1.10.274.30 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › MRG domain | 0.52 | 36.0 | 3.30e-01 | 71.1% | 71.3% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.52 | 37.0 | 3.47e-01 | 73.6% | 66.9% |
| 2lm4A01 | 1.10.150.250 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase | 0.52 | 38.0 | 4.21e-01 | 87.6% | 100.0% |
| 4cybD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 37.0 | 3.34e-01 | 75.2% | 93.6% |
| 7zh0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.51 | 44.0 | 3.16e-01 | 97.5% | 99.5% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3598952 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.67 | 36.0 | 3.56e-01 | 74.4% | 48.5% |
| 3788101 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.57 | 47.0 | 3.99e-01 | 100.0% | 53.2% |
| 4209656 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 43.0 | 4.52e-01 | 100.0% | 92.4% |
| 4481370 | 161.1.1.1 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW | 0.56 | 41.0 | 3.63e-01 | 78.5% | 96.2% |
| 3259759 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.55 | 50.0 | 3.61e-01 | 100.0% | 40.3% |
| 4013411 | 5081.1.1.0 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like | 0.55 | 46.0 | 3.94e-01 | 92.6% | 87.0% |
| 3791157 | 5001.1.1.10 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Ceramidase | 0.54 | 40.0 | 3.09e-01 | 76.9% | 80.4% |
| 3219672 | 601.1.2.79 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM126_like | 0.54 | 48.0 | 4.07e-01 | 95.9% | 75.9% |
| 3660181 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.54 | 45.0 | 3.04e-01 | 94.2% | 78.6% |
| 3999761 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 43.0 | 4.14e-01 | 84.3% | 93.3% |
| 3775826 | 4016.1.1.0 ↗ | alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase | 0.53 | 36.0 | 3.44e-01 | 74.4% | 57.2% |
| 3352332 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 40.0 | 3.25e-01 | 97.5% | 40.9% |
| 3739563 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.53 | 44.0 | 3.92e-01 | 92.6% | 98.3% |
| 3258587 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.52 | 38.0 | 3.33e-01 | 75.2% | 100.0% |
| 4344405 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 39.0 | 3.39e-01 | 78.5% | 82.7% |
| 3756888 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.52 | 39.0 | 3.52e-01 | 77.7% | 68.8% |
| 3712132 | 5081.1.1.2 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 | 0.52 | 44.0 | 3.85e-01 | 95.9% | 89.2% |
| 4969214 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.52 | 40.0 | 3.59e-01 | 91.7% | 57.1% |
| 3264094 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.51 | 27.0 | 2.22e-01 | 86.0% | 26.2% |
| 4060755 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 33.0 | 3.19e-01 | 84.3% | 54.3% |
| 3786197 | 601.1.1.86 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF8314 | 0.51 | 37.0 | 3.19e-01 | 74.4% | 64.3% |
| 5064807 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.51 | 44.0 | 3.65e-01 | 97.5% | 83.1% |
| 3308836 | 5059.1.1.34 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA, Nuc_sug_transp | 0.50 | 40.0 | 2.97e-01 | 85.1% | 70.8% |