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term4_saliva_scaffold_1_prodigal-single.1__X__X__00029
Bact-Virterm4_saliva_scaffold_1_prodigal-single.1__X__X__00029
Identity
- Kingdom:
- phage
Quality
60.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-158
D2
medium
residues 173-208_270-367
Domain cluster:
rep: IMGVR_UViG_3300014028_000116-3300014028-Ga0117810_100144812__D1-30_85-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21448.4 best | DNMK | 47.0 | 3.60e-12 | 72.4% | 38.6% |
D3
medium
residues 209-269
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6u4bA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.57 | 50.0 | 3.22e-01 | 100.0% | 40.6% |
| 2itaA01 | 1.20.5.920 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › rhodobacter sphaeroides pufx membrane protein | 0.55 | 30.0 | 3.14e-01 | 100.0% | 53.6% |
| 4ijaA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 48.0 | 3.64e-01 | 98.4% | 64.7% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 3.26e-01 | 72.1% | 95.9% |
| 3cdhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 3.46e-01 | 93.4% | 79.1% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 44.0 | 3.53e-01 | 100.0% | 69.6% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 35.0 | 3.56e-01 | 83.6% | 70.0% |
| 3euoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 38.0 | 2.90e-01 | 98.4% | 31.2% |
| 2q1fA02 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.52 | 43.0 | 2.70e-01 | 100.0% | 67.2% |
| 4mbsA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 43.0 | 2.72e-01 | 98.4% | 61.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3592356 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.59 | 44.0 | 4.04e-01 | 80.3% | 70.0% |
| 3187789 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.58 | 41.0 | 2.59e-01 | 75.4% | 15.8% |
| 5003867 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.58 | 46.0 | 3.22e-01 | 86.9% | 47.5% |
| 3412176 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.56 | 43.0 | 3.36e-01 | 85.2% | 93.6% |
| 5052430 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.56 | 43.0 | 3.52e-01 | 86.9% | 99.2% |
| 3207626 | 304.48.1.11 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RNA_pol | 0.56 | 44.0 | 3.98e-01 | 100.0% | 63.5% |
| 4075008 | 633.21.1.18 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom | 0.53 | 41.0 | 3.05e-01 | 85.2% | 83.6% |
| 5062332 | 2003.1.1.386 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_C | 0.51 | 39.0 | 2.46e-01 | 86.9% | 63.9% |
| 3787647 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.51 | 43.0 | 3.72e-01 | 98.4% | 85.0% |
| 4988311 | 2003.1.5.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BpsA_C | 0.51 | 40.0 | 2.59e-01 | 86.9% | 30.2% |
| 3419380 | 4.1.1.25 ↗ | beta barrels › SH3 › SH3 › SH3 › PAZ | 0.50 | 37.0 | 3.55e-01 | 78.7% | 85.7% |
| 4978597 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.50 | 41.0 | 2.98e-01 | 93.4% | 43.8% |
| 4585740 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.50 | 40.0 | 3.56e-01 | 100.0% | 60.0% |
| 4190838 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.50 | 40.0 | 3.42e-01 | 100.0% | 54.0% |