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term4_saliva_scaffold_1_prodigal-single.1__X__X__00048
Bact-Virterm4_saliva_scaffold_1_prodigal-single.1__X__X__00048
Identity
- Kingdom:
- phage
Quality
90.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 105-166
Domain cluster:
representative
CATH (64)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.90 | 72.0 | 7.55e-01 | 93.5% | 92.9% |
| 3d5lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 60.0 | 7.02e-01 | 91.9% | 97.8% |
| 3dfgA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 59.0 | 6.63e-01 | 85.5% | 95.8% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.74 | 54.0 | 4.96e-01 | 80.6% | 59.3% |
| 3juiA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.74 | 64.0 | 4.63e-01 | 100.0% | 35.1% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 61.0 | 5.25e-01 | 98.4% | 62.7% |
| 1ldjA03 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.71 | 61.0 | 5.07e-01 | 100.0% | 61.7% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.71 | 61.0 | 5.15e-01 | 100.0% | 67.9% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 56.0 | 4.76e-01 | 98.4% | 60.5% |
| 4v3iA00 | 1.25.40.590 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU | 0.67 | 58.0 | 4.40e-01 | 100.0% | 81.7% |
| 3hwrA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.67 | 56.0 | 4.57e-01 | 100.0% | 55.0% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.66 | 49.0 | 4.57e-01 | 95.2% | 64.1% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.66 | 48.0 | 3.16e-01 | 100.0% | 17.7% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.65 | 52.0 | 4.45e-01 | 91.9% | 83.5% |
| 3qqaA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 52.0 | 5.28e-01 | 100.0% | 93.2% |
| 3aq5A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 56.0 | 4.54e-01 | 96.8% | 94.0% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 54.0 | 4.95e-01 | 98.4% | 86.2% |
| 2xheA04 | 1.25.40.60 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 46.0 | 3.81e-01 | 98.4% | 40.7% |
| 1or7B01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 44.0 | 3.95e-01 | 74.2% | 57.4% |
| 3hl6A02 | 1.20.58.700 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 44.0 | 3.61e-01 | 72.6% | 75.7% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.63 | 50.0 | 4.20e-01 | 91.9% | 82.9% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.63 | 46.0 | 3.85e-01 | 100.0% | 43.8% |
| 3g0oA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.63 | 48.0 | 3.93e-01 | 100.0% | 43.0% |
| 2gkmA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 54.0 | 4.31e-01 | 98.4% | 88.2% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.62 | 48.0 | 4.33e-01 | 85.5% | 70.1% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.62 | 53.0 | 4.74e-01 | 96.8% | 98.9% |
| 7xcnM01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.61 | 46.0 | 4.36e-01 | 100.0% | 66.7% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.60 | 50.0 | 3.53e-01 | 98.4% | 57.7% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.60 | 50.0 | 4.25e-01 | 98.4% | 88.4% |
| 3bulA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.60 | 50.0 | 4.54e-01 | 95.2% | 75.9% |
| 4a8eA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.60 | 47.0 | 4.27e-01 | 98.4% | 63.2% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.60 | 38.0 | 3.79e-01 | 77.4% | 62.5% |
| 3beyD00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.59 | 44.0 | 3.93e-01 | 96.8% | 54.3% |
| 3g3oA00 | 3.20.100.30 | Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain | 0.59 | 45.0 | 3.01e-01 | 90.3% | 18.9% |
| 3tahA02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 45.0 | 4.10e-01 | 85.5% | 85.2% |
| 5k7fA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 51.0 | 3.98e-01 | 100.0% | 52.9% |
| 5n17A01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 45.0 | 3.98e-01 | 91.9% | 79.8% |
| 4lrvF00 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.58 | 46.0 | 3.90e-01 | 87.1% | 67.0% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.58 | 47.0 | 4.06e-01 | 96.8% | 86.2% |
| 3pmcA00 | 1.10.490.70 | Mainly Alpha › Orthogonal Bundle › Globin-like › Histidine kinase N-terminal domain | 0.57 | 47.0 | 3.85e-01 | 100.0% | 47.0% |
| 6j7xA01 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.57 | 45.0 | 3.05e-01 | 100.0% | 21.1% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 46.0 | 3.68e-01 | 100.0% | 48.3% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.56 | 40.0 | 3.64e-01 | 77.4% | 54.0% |
| 1x3kA01 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 48.0 | 3.74e-01 | 100.0% | 95.2% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 43.0 | 3.56e-01 | 85.5% | 63.3% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.55 | 47.0 | 3.92e-01 | 96.8% | 54.1% |
| 4dllB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 48.0 | 3.83e-01 | 100.0% | 82.3% |
| 7zmgL01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 38.0 | 3.56e-01 | 72.6% | 68.8% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 48.0 | 3.90e-01 | 100.0% | 88.4% |
| 2xheA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.55 | 41.0 | 3.38e-01 | 82.3% | 59.5% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 42.0 | 3.92e-01 | 85.5% | 67.9% |
| 3ckyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 47.0 | 3.74e-01 | 100.0% | 88.8% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 47.0 | 3.76e-01 | 100.0% | 81.7% |
| 2gf2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 48.0 | 3.75e-01 | 100.0% | 87.3% |
| 4l3tA03 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 45.0 | 3.13e-01 | 96.8% | 61.5% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.54 | 44.0 | 3.83e-01 | 98.4% | 66.0% |
| 4l9mA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.54 | 42.0 | 3.42e-01 | 95.2% | 42.1% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.53 | 41.0 | 3.89e-01 | 88.7% | 71.8% |
| 2cvzA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 46.0 | 3.68e-01 | 100.0% | 81.8% |
| 3gmfA02 | 1.10.40.110 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.53 | 44.0 | 3.74e-01 | 93.5% | 83.5% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 35.0 | 3.54e-01 | 80.6% | 70.5% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 42.0 | 3.99e-01 | 93.5% | 90.5% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.50 | 43.0 | 3.56e-01 | 100.0% | 87.0% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 36.0 | 3.49e-01 | 80.6% | 78.4% |
ECOD (69)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588595 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.91 | 70.0 | 7.44e-01 | 91.9% | 90.9% |
| 1068638 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.90 | 72.0 | 7.55e-01 | 93.5% | 92.9% |
| 4050022 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.87 | 71.0 | 7.54e-01 | 96.8% | 96.4% |
| 4126690 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.87 | 66.0 | 7.01e-01 | 90.3% | 90.9% |
| 4128053 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.87 | 67.0 | 7.05e-01 | 90.3% | 90.9% |
| 4489939 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.87 | 73.0 | 7.49e-01 | 98.4% | 93.3% |
| 4403239 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.86 | 67.0 | 6.89e-01 | 91.9% | 85.0% |
| 4169204 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.86 | 68.0 | 7.22e-01 | 95.2% | 94.5% |
| 4073017 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.86 | 65.0 | 6.92e-01 | 90.3% | 90.9% |
| 4452388 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.86 | 63.0 | 6.90e-01 | 87.1% | 96.0% |
| 4145773 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.86 | 65.0 | 6.92e-01 | 91.9% | 90.9% |
| 3952621 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.84 | 75.0 | 7.21e-01 | 100.0% | 87.0% |
| 4638215 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.84 | 64.0 | 7.00e-01 | 90.3% | 100.0% |
| 4180031 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.82 | 61.0 | 6.71e-01 | 90.3% | 98.0% |
| 4033612 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.80 | 61.0 | 6.66e-01 | 90.3% | 100.0% |
| 4105244 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.80 | 66.0 | 6.72e-01 | 96.8% | 91.7% |
| 4115902 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.79 | 64.0 | 6.75e-01 | 98.4% | 98.2% |
| 4577554 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.77 | 68.0 | 5.92e-01 | 100.0% | 69.5% |
| 3345966 | 4133.1.1.0 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like | 0.76 | 62.0 | 5.85e-01 | 100.0% | 74.7% |
| 3378555 | 4133.1.1.2 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 | 0.75 | 62.0 | 4.38e-01 | 100.0% | 30.3% |
| 3714293 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.74 | 63.0 | 6.30e-01 | 98.4% | 98.5% |
| 3708809 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 63.0 | 6.21e-01 | 98.4% | 98.5% |
| 4028408 | 7111.1.1.1 ↗ | alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap | 0.73 | 60.0 | 4.17e-01 | 95.2% | 33.6% |
| 3617759 | 529.1.1.2 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP | 0.72 | 59.0 | 5.68e-01 | 100.0% | 80.0% |
| 2701013 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.72 | 62.0 | 5.89e-01 | 100.0% | 94.7% |
| 3250665 | 7111.1.1.1 ↗ | alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap | 0.72 | 57.0 | 4.06e-01 | 90.3% | 35.0% |
| 3789554 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.72 | 62.0 | 5.46e-01 | 96.8% | 83.3% |
| 3542152 | 397.7.1.7 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › BSMAP | 0.71 | 60.0 | 5.32e-01 | 100.0% | 65.6% |
| 1146588 | 3640.1.1.1 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp | 0.71 | 61.0 | 5.15e-01 | 100.0% | 67.9% |
| 4626177 | 101.32.1.0 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin | 0.71 | 60.0 | 5.63e-01 | 100.0% | 81.2% |
| 3596754 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.70 | 59.0 | 5.89e-01 | 100.0% | 93.8% |
| 4984229 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.70 | 62.0 | 4.24e-01 | 100.0% | 36.7% |
| 4926806 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 59.0 | 5.27e-01 | 96.8% | 88.9% |
| 3777032 | 5054.1.1.11 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › SK_channel | 0.68 | 46.0 | 3.15e-01 | 71.0% | 22.3% |
| 5058545 | 4003.1.1.0 ↗ | alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins | 0.67 | 57.0 | 5.37e-01 | 95.2% | 82.7% |
| 2889550 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.67 | 52.0 | 4.74e-01 | 96.8% | 63.1% |
| 3251599 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 57.0 | 5.41e-01 | 100.0% | 82.7% |
| 3982032 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.67 | 45.0 | 4.21e-01 | 71.0% | 67.5% |
| 4465167 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.67 | 57.0 | 4.76e-01 | 96.8% | 59.1% |
| 4039353 | 4003.1.1.0 ↗ | alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins | 0.66 | 54.0 | 5.10e-01 | 100.0% | 76.0% |
| 5036631 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.66 | 57.0 | 4.90e-01 | 100.0% | 68.6% |
| 5044192 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.64 | 53.0 | 3.25e-01 | 96.8% | 25.8% |
| 4945001 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 47.0 | 4.06e-01 | 79.0% | 55.0% |
| 3946046 | 101.1.2.52 ↗ | alpha arrays › HTH › HTH › winged helix domain › KicB | 0.63 | 51.0 | 4.88e-01 | 91.9% | 81.3% |
| 3900434 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.63 | 41.0 | 3.65e-01 | 72.6% | 44.2% |
| 3648733 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.63 | 52.0 | 3.72e-01 | 96.8% | 91.0% |
| 2427478 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 53.0 | 3.78e-01 | 100.0% | 52.9% |
| 3595902 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.62 | 51.0 | 3.70e-01 | 96.8% | 85.5% |
| 3464388 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.61 | 50.0 | 4.18e-01 | 100.0% | 50.4% |
| 4655797 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.61 | 50.0 | 4.41e-01 | 98.4% | 62.1% |
| 5002642 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.59 | 45.0 | 3.93e-01 | 100.0% | 52.5% |
| 3920864 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.59 | 47.0 | 3.86e-01 | 100.0% | 49.7% |
| 3663220 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.59 | 52.0 | 4.10e-01 | 100.0% | 89.6% |
| 4939128 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.59 | 51.0 | 4.92e-01 | 100.0% | 91.4% |
| 3218544 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 48.0 | 4.44e-01 | 91.9% | 81.2% |
| 5002850 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.59 | 47.0 | 4.13e-01 | 95.2% | 57.9% |
| 4948444 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.59 | 42.0 | 3.04e-01 | 79.0% | 49.5% |
| 4980158 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.58 | 43.0 | 3.00e-01 | 95.2% | 22.3% |
| 4426191 | 101.1.3.26 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › YcbB | 0.57 | 48.0 | 3.69e-01 | 100.0% | 82.5% |
| 3934654 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 41.0 | 2.96e-01 | 75.8% | 26.7% |
| 4927448 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.57 | 41.0 | 3.91e-01 | 90.3% | 63.7% |
| 5068596 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.56 | 45.0 | 3.06e-01 | 95.2% | 24.0% |
| 4971640 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 47.0 | 2.94e-01 | 98.4% | 24.5% |
| 4995681 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.55 | 45.0 | 4.46e-01 | 100.0% | 89.2% |
| 5073302 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.54 | 46.0 | 3.59e-01 | 96.8% | 43.6% |
| 4934943 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.53 | 42.0 | 3.89e-01 | 91.9% | 74.1% |
| 1556809 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.52 | 41.0 | 4.05e-01 | 90.3% | 97.1% |
| 3596608 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.52 | 41.0 | 3.85e-01 | 96.8% | 82.4% |
| 3505507 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.51 | 40.0 | 3.94e-01 | 91.9% | 91.4% |
D2
medium
residues 8-49
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 74.0 | 6.83e-01 | 100.0% | 79.2% |
| 3dfgA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 70.0 | 6.76e-01 | 100.0% | 85.4% |
| 1r1dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.78 | 67.0 | 4.10e-01 | 95.2% | 43.0% |
| 2bzbA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.78 | 54.0 | 4.75e-01 | 73.8% | 51.6% |
| 2wcrB00 | 3.10.129.140 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein | 0.75 | 67.0 | 4.56e-01 | 100.0% | 61.6% |
| 1rkbA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 63.0 | 4.17e-01 | 95.2% | 69.4% |
| 2lmzA00 | 1.10.10.2920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 43.0 | 4.38e-01 | 83.3% | 76.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932940 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.88 | 62.0 | 4.41e-01 | 73.8% | 30.0% |
| 4384171 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.86 | 75.0 | 7.34e-01 | 100.0% | 91.1% |
| 4081078 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.86 | 76.0 | 5.47e-01 | 100.0% | 37.3% |
| 4036335 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.85 | 75.0 | 5.45e-01 | 100.0% | 37.3% |
| 4419601 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.85 | 74.0 | 7.01e-01 | 100.0% | 82.0% |
| 4438233 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.85 | 74.0 | 5.46e-01 | 100.0% | 39.0% |
| 4323683 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.84 | 74.0 | 5.39e-01 | 100.0% | 37.3% |
| 4167193 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.84 | 73.0 | 7.20e-01 | 100.0% | 91.1% |
| 1068636 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.83 | 74.0 | 6.83e-01 | 100.0% | 79.2% |
| 5076045 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.82 | 71.0 | 4.55e-01 | 100.0% | 21.2% |
| 4033611 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.81 | 69.0 | 6.83e-01 | 100.0% | 93.3% |
| 3397049 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.81 | 68.0 | 5.14e-01 | 100.0% | 40.4% |
| 4392311 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.81 | 68.0 | 6.68e-01 | 97.6% | 88.9% |
| 4979226 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.80 | 60.0 | 4.35e-01 | 81.0% | 30.9% |
| 5030241 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.76 | 64.0 | 5.73e-01 | 100.0% | 68.3% |
| 4948835 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.73 | 62.0 | 6.24e-01 | 100.0% | 97.7% |
| 3955983 | 102.1.1.36 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_pol_A_exoN | 0.69 | 54.0 | 4.33e-01 | 100.0% | 44.7% |
| 3936170 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.67 | 55.0 | 3.89e-01 | 100.0% | 35.2% |
| 5027999 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 55.0 | 5.05e-01 | 100.0% | 70.0% |
| 3837994 | 2004.1.1.455 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 | 0.58 | 47.0 | 2.65e-01 | 100.0% | 6.7% |
| 3828120 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.54 | 43.0 | 3.02e-01 | 95.2% | 69.4% |
D3
medium
residues 54-101
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 70.0 | 7.04e-01 | 100.0% | 95.8% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.77 | 60.0 | 4.65e-01 | 100.0% | 38.5% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 65.0 | 5.73e-01 | 100.0% | 74.0% |
| 4g84A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.73 | 65.0 | 3.89e-01 | 100.0% | 14.4% |
| 5cz2G00 | 1.10.10.200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain | 0.72 | 53.0 | 5.56e-01 | 100.0% | 95.1% |
| 4yiiA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 60.0 | 5.39e-01 | 100.0% | 91.7% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 53.0 | 4.66e-01 | 97.9% | 53.8% |
| 3fblA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 62.0 | 5.20e-01 | 100.0% | 72.0% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 57.0 | 4.90e-01 | 97.9% | 74.4% |
| 4a0zA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 54.0 | 5.13e-01 | 100.0% | 74.6% |
| 2c42A03 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.68 | 56.0 | 3.77e-01 | 100.0% | 27.4% |
| 1k78I00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 56.0 | 5.36e-01 | 100.0% | 87.9% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.67 | 57.0 | 4.64e-01 | 97.9% | 58.5% |
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.67 | 56.0 | 5.33e-01 | 97.9% | 96.6% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 55.0 | 5.00e-01 | 95.8% | 73.1% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 52.0 | 4.84e-01 | 97.9% | 68.2% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 50.0 | 4.38e-01 | 97.9% | 52.4% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 4.65e-01 | 100.0% | 54.0% |
| 6oinA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 54.0 | 4.90e-01 | 100.0% | 67.2% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 54.0 | 4.57e-01 | 100.0% | 71.1% |
| 2xzlA05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 55.0 | 3.66e-01 | 100.0% | 23.6% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 48.0 | 4.88e-01 | 97.9% | 83.3% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 58.0 | 4.50e-01 | 100.0% | 51.5% |
| 4l22A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.64 | 57.0 | 3.29e-01 | 100.0% | 26.8% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.64 | 51.0 | 4.01e-01 | 87.5% | 92.9% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.64 | 53.0 | 4.43e-01 | 97.9% | 53.9% |
| 8gf5C01 | 3.30.70.470 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 54.0 | 3.94e-01 | 100.0% | 85.9% |
| 6vbkB02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 42.0 | 3.65e-01 | 70.8% | 75.3% |
| 6hftA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.62 | 49.0 | 3.66e-01 | 100.0% | 33.9% |
| 3pubA01 | 1.10.10.2400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain | 0.62 | 50.0 | 4.54e-01 | 100.0% | 68.9% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.61 | 47.0 | 4.07e-01 | 85.4% | 58.2% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 3.74e-01 | 97.9% | 38.8% |
| 2h56A02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.60 | 49.0 | 3.83e-01 | 97.9% | 94.7% |
| 3qdnA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 45.0 | 3.84e-01 | 100.0% | 50.0% |
| 2yweA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 49.0 | 3.42e-01 | 97.9% | 43.8% |
| 1ac1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 44.0 | 3.07e-01 | 93.8% | 29.3% |
| 2lahA00 | 1.25.40.430 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 43.0 | 3.22e-01 | 100.0% | 28.7% |
| 4u04B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 44.0 | 3.77e-01 | 100.0% | 51.1% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.54 | 43.0 | 3.91e-01 | 100.0% | 80.0% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.54 | 46.0 | 3.07e-01 | 100.0% | 24.1% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 47.0 | 4.09e-01 | 100.0% | 81.1% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.54 | 43.0 | 2.92e-01 | 95.8% | 59.2% |
| 5tqbB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 43.0 | 2.70e-01 | 100.0% | 14.5% |
| 4pxoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 42.0 | 3.25e-01 | 100.0% | 40.5% |
| 2p1aB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.51 | 42.0 | 3.02e-01 | 93.8% | 60.3% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3164429 | 101.35.1.1 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 | 0.92 | 78.0 | 8.07e-01 | 95.8% | 97.8% |
| 3439843 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.81 | 71.0 | 5.87e-01 | 100.0% | 61.2% |
| 4996152 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.80 | 67.0 | 5.49e-01 | 100.0% | 51.1% |
| 3293154 | 101.1.2.472 ↗ | alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 | 0.80 | 70.0 | 6.53e-01 | 100.0% | 86.7% |
| 1169399 | 101.35.1.2 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp | 0.79 | 66.0 | 6.55e-01 | 100.0% | 90.4% |
| 3829115 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.79 | 69.0 | 6.31e-01 | 100.0% | 80.0% |
| 3341091 | 101.35.1.6 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 | 0.78 | 68.0 | 6.22e-01 | 100.0% | 80.0% |
| 5042980 | 101.35.1.41 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › PF26555 | 0.78 | 65.0 | 6.49e-01 | 100.0% | 92.0% |
| 4946699 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 65.0 | 5.46e-01 | 100.0% | 66.3% |
| 3340005 | 101.1.2.472 ↗ | alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 | 0.77 | 67.0 | 5.51e-01 | 100.0% | 59.1% |
| 3334461 | 101.1.1.270 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › A_thal_3526 | 0.77 | 66.0 | 5.80e-01 | 100.0% | 69.3% |
| 4984715 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.77 | 65.0 | 4.26e-01 | 100.0% | 22.5% |
| 3472278 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.76 | 63.0 | 5.60e-01 | 100.0% | 84.0% |
| 3490008 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 63.0 | 5.85e-01 | 100.0% | 96.9% |
| 5041057 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 63.0 | 5.18e-01 | 100.0% | 67.4% |
| 4971669 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 62.0 | 4.57e-01 | 100.0% | 37.2% |
| 5053497 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 63.0 | 5.93e-01 | 100.0% | 90.0% |
| 3623357 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.74 | 61.0 | 5.84e-01 | 95.8% | 80.0% |
| 5031401 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 62.0 | 5.34e-01 | 100.0% | 75.0% |
| 5042759 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 62.0 | 5.45e-01 | 100.0% | 70.7% |
| 4995688 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 62.0 | 6.05e-01 | 100.0% | 87.3% |
| 4995680 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.73 | 64.0 | 5.96e-01 | 100.0% | 86.7% |
| 3633660 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.73 | 65.0 | 3.82e-01 | 100.0% | 25.8% |
| 3684901 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.73 | 65.0 | 3.81e-01 | 100.0% | 26.5% |
| 5044288 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 61.0 | 5.26e-01 | 100.0% | 72.5% |
| 3781503 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 59.0 | 5.73e-01 | 97.9% | 81.8% |
| 4002452 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.72 | 64.0 | 3.76e-01 | 100.0% | 13.7% |
| 5026703 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.72 | 51.0 | 3.00e-01 | 79.2% | 9.9% |
| 3786987 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.72 | 64.0 | 3.72e-01 | 97.9% | 15.7% |
| 4952882 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 59.0 | 5.16e-01 | 100.0% | 76.2% |
| 4941712 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.71 | 60.0 | 4.12e-01 | 95.8% | 74.7% |
| 4969624 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 59.0 | 5.35e-01 | 100.0% | 92.9% |
| 3310491 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 58.0 | 5.46e-01 | 97.9% | 76.7% |
| 3978848 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 57.0 | 4.87e-01 | 97.9% | 54.1% |
| 4932241 | 2007.1.2.56 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF116 | 0.69 | 56.0 | 3.94e-01 | 100.0% | 28.3% |
| 3970291 | 101.1.1.217 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › RsmI_C | 0.69 | 56.0 | 5.69e-01 | 100.0% | 100.0% |
| 3970076 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 57.0 | 5.70e-01 | 100.0% | 98.0% |
| 4165729 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.69 | 59.0 | 4.08e-01 | 100.0% | 28.5% |
| 3887965 | 101.1.1.12 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 | 0.69 | 58.0 | 5.61e-01 | 100.0% | 92.7% |
| 3878549 | 101.1.2.536 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 | 0.68 | 58.0 | 5.60e-01 | 100.0% | 92.7% |
| 4983598 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 56.0 | 5.22e-01 | 100.0% | 84.6% |
| 4965236 | 101.1.2.952 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF29290 | 0.67 | 56.0 | 5.31e-01 | 100.0% | 85.0% |
| 4464648 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.67 | 55.0 | 5.14e-01 | 100.0% | 75.4% |
| 4957413 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.67 | 55.0 | 5.49e-01 | 100.0% | 100.0% |
| 4989426 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.67 | 53.0 | 5.11e-01 | 100.0% | 80.0% |
| None | — | 0.66 | 53.0 | 4.64e-01 | 100.0% | 74.1% | |
| 3191996 | 101.1.2.480 ↗ | alpha arrays › HTH › HTH › winged helix domain › Clr5 | 0.66 | 56.0 | 5.38e-01 | 100.0% | 85.5% |
| 3973616 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 54.0 | 5.12e-01 | 100.0% | 80.0% |
| 4941973 | 314.1.1.4 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2c | 0.65 | 54.0 | 3.14e-01 | 100.0% | 10.1% |
| 4967020 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.65 | 48.0 | 3.61e-01 | 87.5% | 30.8% |
| 3889516 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.64 | 51.0 | 4.22e-01 | 100.0% | 69.5% |
| 3277622 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.64 | 53.0 | 3.15e-01 | 100.0% | 12.1% |
| 3223878 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.63 | 51.0 | 3.80e-01 | 97.9% | 35.2% |
| 3983493 | 101.1.2.244 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_21 | 0.63 | 52.0 | 5.15e-01 | 100.0% | 100.0% |
| 3473498 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 50.0 | 4.38e-01 | 97.9% | 83.5% |
| 4578986 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 55.0 | 5.14e-01 | 100.0% | 85.0% |
| 3063543 | 109.23.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 | 0.62 | 51.0 | 3.88e-01 | 100.0% | 55.0% |
| 3404571 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.61 | 48.0 | 4.32e-01 | 100.0% | 80.0% |
| 10305 | 7516.1.1.25 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB | 0.61 | 53.0 | 3.05e-01 | 97.9% | 18.4% |
| 3579249 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 48.0 | 4.20e-01 | 100.0% | 68.2% |
| 3730259 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.60 | 48.0 | 4.41e-01 | 91.7% | 90.8% |
| 3737108 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.56 | 45.0 | 4.20e-01 | 97.9% | 90.8% |
| 143586 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.54 | 43.0 | 3.91e-01 | 100.0% | 80.0% |