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term4_saliva_scaffold_1_prodigal-single.1__X__X__00068
Bact-Virterm4_saliva_scaffold_1_prodigal-single.1__X__X__00068
Identity
- Kingdom:
- phage
Quality
62.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 34-103_140-159_208-273
Domain cluster:
rep: Filtrate_w_scaffold_3_prodigal-single.1__X__X__00397__D12-129_164-245_416-433
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cxjA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.65 | 47.0 | 4.95e-01 | 74.4% | 81.2% |
| 4mt1A06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.65 | 42.0 | 5.01e-01 | 91.7% | 100.0% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.64 | 41.0 | 4.60e-01 | 73.1% | 81.8% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 34.0 | 4.27e-01 | 71.2% | 87.6% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 36.0 | 4.30e-01 | 71.8% | 81.3% |
| 2pgcA02 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 38.0 | 4.40e-01 | 71.8% | 87.7% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.62 | 42.0 | 4.91e-01 | 80.1% | 99.1% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.61 | 37.0 | 4.26e-01 | 72.4% | 83.0% |
| 5wpjA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.61 | 40.0 | 4.75e-01 | 74.4% | 97.2% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 37.0 | 4.56e-01 | 71.8% | 97.9% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 34.0 | 4.02e-01 | 73.1% | 79.4% |
| 3fmbA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 38.0 | 4.52e-01 | 72.4% | 96.0% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 34.0 | 4.17e-01 | 72.4% | 90.2% |
| 4ushA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 35.0 | 4.11e-01 | 76.9% | 84.5% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 36.0 | 4.42e-01 | 78.8% | 96.9% |
| 5e4bA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 42.0 | 4.03e-01 | 71.8% | 96.0% |
| 4nohA01 | 3.30.70.3060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 29.0 | 4.01e-01 | 77.6% | 100.0% |
| 4dpoB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 36.0 | 4.35e-01 | 73.7% | 94.1% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 41.0 | 4.67e-01 | 72.4% | 97.4% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 4.67e-01 | 71.8% | 97.4% |
| 6ofsA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 43.0 | 4.12e-01 | 77.6% | 97.8% |
| 4pxeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 4.58e-01 | 71.8% | 97.4% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 36.0 | 4.29e-01 | 89.1% | 96.0% |
| 1y0hB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 34.0 | 4.12e-01 | 71.8% | 92.9% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 33.0 | 4.09e-01 | 70.5% | 95.7% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.56 | 43.0 | 4.06e-01 | 80.8% | 83.4% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 36.0 | 4.22e-01 | 72.4% | 94.4% |
| 1xuvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 39.0 | 3.87e-01 | 70.5% | 94.5% |
| 3klxB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 40.0 | 3.84e-01 | 73.7% | 100.0% |
| 2abyA00 | 3.30.70.1980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 | 0.56 | 38.0 | 4.24e-01 | 76.3% | 88.5% |
| 4c98A01 | 3.30.70.1890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 34.0 | 4.02e-01 | 75.6% | 90.5% |
| 1l2mA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.55 | 34.0 | 3.89e-01 | 80.8% | 81.4% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 34.0 | 3.93e-01 | 73.7% | 86.2% |
| 1f5aA01 | 3.30.70.590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain | 0.55 | 37.0 | 4.36e-01 | 78.2% | 100.0% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 4.03e-01 | 71.8% | 82.0% |
| 7qu9A01 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.55 | 42.0 | 3.05e-01 | 80.8% | 69.5% |
| 3kkfA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 3.84e-01 | 73.7% | 87.6% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 29.0 | 3.60e-01 | 70.5% | 86.8% |
| 8ab6B02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 40.0 | 3.81e-01 | 78.2% | 91.9% |
| 3bzmA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.53 | 40.0 | 2.95e-01 | 79.5% | 75.1% |
| 5jxzA00 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.52 | 40.0 | 3.08e-01 | 80.1% | 84.5% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.52 | 40.0 | 4.18e-01 | 90.4% | 88.8% |
| 2uuvB01 | 3.40.462.40 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix | 0.51 | 40.0 | 3.32e-01 | 86.5% | 47.2% |
| 1q2lA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 45.0 | 3.99e-01 | 96.8% | 83.1% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.51 | 37.0 | 3.67e-01 | 89.1% | 71.6% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 32.0 | 3.69e-01 | 73.1% | 88.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5055923 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.78 | 59.0 | 6.57e-01 | 89.7% | 98.4% |
| 3587109 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.68 | 33.0 | 4.26e-01 | 71.8% | 80.0% |
| 4984314 | 304.43.1.6 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 › FLAD1_M | 0.67 | 39.0 | 4.95e-01 | 73.1% | 97.8% |
| 4976516 | 304.19.1.0 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain | 0.67 | 39.0 | 4.90e-01 | 90.4% | 97.8% |
| 3479702 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.67 | 37.0 | 4.35e-01 | 70.5% | 78.1% |
| 5047554 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.66 | 48.0 | 4.90e-01 | 74.4% | 79.3% |
| 3281285 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.65 | 44.0 | 3.67e-01 | 78.2% | 41.2% |
| 4937786 | 304.5.1.3 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 | 0.63 | 35.0 | 4.28e-01 | 73.7% | 84.0% |
| 5033257 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.63 | 32.0 | 4.37e-01 | 76.9% | 98.7% |
| 4999750 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.63 | 36.0 | 4.47e-01 | 72.4% | 92.6% |
| 5053097 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.62 | 38.0 | 4.65e-01 | 89.7% | 98.9% |
| 3480012 | 304.113.1.3 ↗ | a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › JAG1 | 0.61 | 40.0 | 4.66e-01 | 73.1% | 93.6% |
| 5075567 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.61 | 41.0 | 4.81e-01 | 71.2% | 97.3% |
| 5072410 | 306.6.1.6 ↗ | a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like › GH3_C | 0.61 | 35.0 | 4.38e-01 | 70.5% | 96.7% |
| 3697109 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.60 | 45.0 | 3.18e-01 | 78.2% | 65.6% |
| 5045865 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.60 | 37.0 | 4.59e-01 | 77.6% | 100.0% |
| 4948091 | 304.116.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › DUF460 | 0.59 | 38.0 | 4.61e-01 | 97.4% | 100.0% |
| 4990439 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.59 | 38.0 | 4.57e-01 | 81.4% | 100.0% |
| 3552777 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 44.0 | 2.91e-01 | 77.6% | 27.4% |
| 1888731 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.59 | 41.0 | 3.99e-01 | 71.2% | 94.9% |
| 5051665 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.58 | 42.0 | 3.67e-01 | 73.1% | 98.2% |
| 4665957 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.58 | 37.0 | 4.45e-01 | 71.8% | 96.2% |
| 4028741 | 304.20.1.1 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind | 0.57 | 45.0 | 4.83e-01 | 89.1% | 98.5% |
| 3412376 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 38.0 | 4.33e-01 | 73.1% | 92.2% |
| 3665392 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 39.0 | 4.41e-01 | 71.2% | 99.2% |
| 3599466 | 304.42.1.0 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC | 0.55 | 39.0 | 3.95e-01 | 72.4% | 81.9% |
| 4932798 | 304.8.1.81 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P | 0.55 | 41.0 | 4.00e-01 | 79.5% | 70.3% |
| 3861272 | 304.47.1.5 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › PF29544 | 0.54 | 38.0 | 4.36e-01 | 77.6% | 100.0% |
| 4975078 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.54 | 36.0 | 4.20e-01 | 78.8% | 99.0% |
| 3626410 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 36.0 | 4.19e-01 | 71.2% | 99.1% |
| 4001734 | 304.47.1.0 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain | 0.53 | 35.0 | 3.96e-01 | 72.4% | 90.4% |
| 4051078 | 304.4.1.71 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF4937 | 0.52 | 35.0 | 3.94e-01 | 76.3% | 91.3% |
| 4319533 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.52 | 37.0 | 3.89e-01 | 72.4% | 90.7% |
| 3716228 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.52 | 37.0 | 3.93e-01 | 74.4% | 88.6% |
| 3175129 | 6169.1.1.45 ↗ | extended segments › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › Transmembrane segment of lysosome-associated membrane glycoprotein 2 › PF27810 | 0.52 | 36.0 | 4.08e-01 | 71.8% | 97.4% |
| 4074059 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.50 | 37.0 | 3.49e-01 | 76.9% | 92.3% |
D2
medium
residues 287-344_405-491
D3
medium
residues 345-404