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term4_saliva_scaffold_1_prodigal-single.1__X__X__00151

Bact-Vir

term4_saliva_scaffold_1_prodigal-single.1__X__X__00151

Identity

Kingdom:
phage

Quality

75.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-60_76-132
PDB
Domain cluster: rep: term6_saliva_scaffold_0_prodigal-single.1__X__X__00029__D8-133
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 33.0 3.97e-01 96.6% 69.2%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 31.0 3.47e-01 96.6% 57.8%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 31.0 3.64e-01 96.6% 65.8%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 30.0 3.61e-01 95.7% 68.8%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 31.0 3.78e-01 81.9% 77.0%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 31.0 3.44e-01 98.3% 62.9%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 33.0 3.53e-01 93.1% 63.0%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 30.0 3.56e-01 96.6% 70.9%
8a9xA01 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.58 29.0 3.42e-01 98.3% 69.3%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 28.0 3.19e-01 98.3% 62.5%
1gpcA00 3.90.198.10 Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein 0.54 42.0 3.49e-01 84.5% 76.1%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 45.0 4.52e-01 93.1% 92.2%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.53 40.0 3.12e-01 80.2% 92.5%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 40.0 3.34e-01 81.9% 64.7%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 39.0 3.83e-01 81.9% 98.5%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 28.0 3.02e-01 99.1% 63.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3551257 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.68 34.0 3.69e-01 99.1% 56.0%
3970847 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 40.0 4.95e-01 79.3% 100.0%
3789510 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.63 32.0 3.70e-01 98.3% 65.9%
5012955 1.1.7.128 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF515 0.62 36.0 4.09e-01 97.4% 76.5%
3815092 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 32.0 3.43e-01 100.0% 56.0%
3260811 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 34.0 4.29e-01 77.6% 95.4%
3396694 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.61 33.0 3.69e-01 98.3% 66.7%
3267081 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 36.0 3.73e-01 94.8% 63.8%
None — 0.59 31.0 3.37e-01 100.0% 58.0%
4864011 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.59 34.0 3.58e-01 94.8% 61.0%
4987588 304.8.1.82 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.58 33.0 3.63e-01 100.0% 67.4%
2575510 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 30.0 3.31e-01 98.3% 58.5%
3357534 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 32.0 3.41e-01 93.1% 61.0%
3823591 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 30.0 3.19e-01 99.1% 56.0%
169967 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.52 40.0 3.90e-01 82.8% 98.5%
3813787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 40.0 4.06e-01 81.9% 93.0%
4505786 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 38.0 3.78e-01 77.6% 100.0%
3645120 304.8.1.55 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_C 0.51 28.0 2.97e-01 95.7% 57.1%
3218216 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 38.0 3.46e-01 77.6% 86.5%
3611718 3863.1.1.0 ↗ beta barrels › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) › Virulence associated protein B (Vapb) 0.51 39.0 3.76e-01 81.0% 88.0%
4025310 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 39.0 3.85e-01 83.6% 79.2%
3963716 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 38.0 3.89e-01 80.2% 89.1%
4262943 220.1.1.184 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.50 36.0 3.56e-01 75.0% 92.0%