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term4_saliva_scaffold_1_prodigal-single.1__X__X__00204

Bact-Vir

term4_saliva_scaffold_1_prodigal-single.1__X__X__00204

Identity

Kingdom:
phage

Quality

59.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-68
PDB
D2 high residues 75-164_271-352
PDB
D3 high residues 170-258
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 44.0 5.05e-01 92.1% 79.7%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 47.0 5.59e-01 98.9% 100.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 48.0 4.37e-01 95.5% 53.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 38.0 4.93e-01 89.9% 95.8%
1p3cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 48.0 4.54e-01 95.5% 60.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.23e-01 96.6% 91.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 4.88e-01 98.9% 87.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.64 48.0 3.62e-01 95.5% 33.3%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.64 45.0 4.45e-01 73.0% 98.9%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.63 47.0 4.79e-01 100.0% 80.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 40.0 4.28e-01 88.8% 74.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 39.0 4.69e-01 87.6% 98.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 40.0 4.58e-01 88.8% 92.2%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 40.0 4.74e-01 88.8% 100.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 39.0 4.51e-01 88.8% 93.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 38.0 4.19e-01 95.5% 80.9%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.52e-01 88.8% 87.7%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 40.0 3.87e-01 95.5% 59.0%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 47.0 4.59e-01 87.6% 86.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.68e-01 92.1% 100.0%
5fahA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 45.0 4.13e-01 94.4% 63.2%
1si5H01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 46.0 4.17e-01 95.5% 63.9%
5iqaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 41.0 4.11e-01 74.2% 100.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 4.17e-01 100.0% 80.8%
2lfuA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.57 49.0 4.40e-01 96.6% 89.9%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 38.0 4.29e-01 87.6% 91.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 4.48e-01 100.0% 97.0%
8ciwA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.56 44.0 3.89e-01 84.3% 56.4%
1gvzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 46.0 4.19e-01 94.4% 66.1%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 4.27e-01 100.0% 93.9%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 45.0 3.82e-01 89.9% 87.7%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 38.0 4.16e-01 98.9% 86.5%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.56 46.0 4.21e-01 89.9% 77.8%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.92e-01 88.8% 75.0%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.55 44.0 3.44e-01 86.5% 84.1%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.55 44.0 3.75e-01 91.0% 90.0%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.54 45.0 3.97e-01 95.5% 89.9%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.57e-01 94.4% 95.0%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 42.0 3.66e-01 98.9% 55.5%
3s9cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 42.0 3.87e-01 87.6% 85.0%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.73e-01 95.5% 72.7%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.53 46.0 4.06e-01 97.8% 78.2%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.52 46.0 4.10e-01 97.8% 71.7%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.52 44.0 3.20e-01 96.6% 98.1%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3616007 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.81 49.0 6.14e-01 92.1% 100.0%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.80 53.0 6.30e-01 94.4% 100.0%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.79 52.0 6.22e-01 97.8% 100.0%
4937423 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 59.0 6.03e-01 97.8% 83.5%
3929373 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.77 50.0 6.02e-01 93.3% 100.0%
4321173 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.75 45.0 5.49e-01 95.5% 93.1%
3414063 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.75 46.0 5.65e-01 91.0% 100.0%
3662319 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.74 56.0 5.86e-01 98.9% 87.5%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.68e-01 93.3% 100.0%
3923813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 47.0 5.38e-01 93.3% 98.5%
3415399 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.66 45.0 3.40e-01 70.8% 51.6%
3633294 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.66 52.0 4.45e-01 89.9% 54.3%
3723768 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 47.0 4.77e-01 100.0% 76.7%
3649906 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.64 51.0 5.01e-01 86.5% 90.5%
4940710 3174.2.1.0 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA 0.63 44.0 4.97e-01 92.1% 98.5%
3165475 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.62 50.0 4.19e-01 88.8% 98.7%
4987228 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 45.0 3.66e-01 76.4% 78.7%
3898952 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 43.0 4.61e-01 97.8% 85.3%
158943 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 40.0 4.21e-01 88.8% 74.7%
2725406 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 39.0 4.11e-01 88.8% 72.0%
3240651 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 39.0 4.06e-01 88.8% 72.5%
3541996 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.60 38.0 3.00e-01 88.8% 30.5%
3485745 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 38.0 4.45e-01 86.5% 95.0%
3225762 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 41.0 4.48e-01 89.9% 85.3%
3622911 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 44.0 4.83e-01 93.3% 98.6%
3222210 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 42.0 4.63e-01 96.6% 94.3%
2890675 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 38.0 4.34e-01 88.8% 90.6%
3514867 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 38.0 4.07e-01 88.8% 77.3%
3022070 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.59 54.0 4.93e-01 100.0% 93.9%
3495480 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 37.0 4.37e-01 87.6% 95.0%
3241614 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 50.0 4.32e-01 95.5% 76.6%
4989205 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.59 44.0 3.54e-01 92.1% 40.0%
3241890 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.90e-01 96.6% 85.0%
3385856 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.58 40.0 4.63e-01 87.6% 100.0%
3515770 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.58 47.0 3.31e-01 88.8% 34.2%
3626691 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 42.0 4.11e-01 94.4% 68.0%
3243188 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 45.0 4.89e-01 97.8% 97.3%
3915732 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 39.0 4.05e-01 100.0% 74.1%
3576437 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.10e-01 94.4% 68.0%
4101587 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.58 52.0 4.92e-01 98.9% 95.2%
3224441 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 36.0 4.06e-01 88.8% 83.8%
4081631 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 37.0 4.04e-01 88.8% 80.0%
3880325 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 36.0 3.94e-01 86.5% 81.4%
3783835 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.56 45.0 3.22e-01 95.5% 29.1%
3611989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.07e-01 94.4% 62.7%
3482646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.09e-01 91.0% 33.5%
3905176 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 38.0 4.33e-01 100.0% 96.9%
3888419 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.56 48.0 3.45e-01 97.8% 91.3%
3710131 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.56 47.0 4.02e-01 92.1% 63.2%
3782325 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 37.0 4.25e-01 88.8% 96.8%
3529708 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 36.0 3.92e-01 88.8% 80.0%
3315951 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.55 44.0 4.62e-01 100.0% 98.7%
3398379 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 44.0 4.06e-01 88.8% 77.5%
3870111 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 48.0 3.49e-01 96.6% 44.4%
3784612 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.55 49.0 3.89e-01 95.5% 50.0%
3850131 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 38.0 3.93e-01 91.0% 75.3%
3402950 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.54 49.0 3.11e-01 100.0% 26.7%
3216019 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 38.0 4.30e-01 88.8% 100.0%
3165077 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.53 36.0 3.96e-01 84.3% 88.6%
3545617 5.1.11.13 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_RIC1_2nd 0.53 43.0 2.59e-01 89.9% 20.1%
3599257 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 36.0 3.95e-01 93.3% 96.9%
3227607 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.52 45.0 3.23e-01 100.0% 90.7%
3808601 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 44.0 4.55e-01 94.4% 96.5%
2887272 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.52 43.0 4.16e-01 96.6% 96.1%
4358722 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.52 37.0 3.50e-01 92.1% 62.9%
3731812 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.51 42.0 3.57e-01 93.3% 83.7%
5027789 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.51 43.0 4.17e-01 98.9% 80.0%
4520767 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.51 34.0 3.80e-01 85.4% 88.6%
3843148 5.1.4.223 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.51 41.0 2.45e-01 87.6% 13.5%
3718060 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 4.06e-01 100.0% 75.7%