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term4_saliva_scaffold_1_prodigal-single.1__X__X__00214
Bact-Virterm4_saliva_scaffold_1_prodigal-single.1__X__X__00214
Identity
- Kingdom:
- phage
Quality
75.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-99
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.72 | 36.0 | 3.79e-01 | 100.0% | 51.7% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.66 | 39.0 | 3.72e-01 | 100.0% | 50.5% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 36.0 | 3.76e-01 | 100.0% | 57.5% |
| 3k2yA00 | 3.30.70.2330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 58.0 | 5.67e-01 | 100.0% | 91.3% |
| 1rl2A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 37.0 | 4.53e-01 | 76.0% | 92.9% |
| 2z9iC01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 37.0 | 3.80e-01 | 100.0% | 58.7% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.62 | 35.0 | 3.57e-01 | 100.0% | 56.2% |
| 1pxfA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 42.0 | 4.03e-01 | 77.1% | 81.1% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.57 | 32.0 | 3.41e-01 | 100.0% | 62.2% |
| 4g1vA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 38.0 | 3.60e-01 | 70.8% | 99.2% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 32.0 | 3.56e-01 | 100.0% | 73.0% |
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.54 | 37.0 | 3.62e-01 | 97.9% | 63.3% |
| 4c1wA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 3.22e-01 | 79.2% | 67.0% |
| 3fm2A00 | 3.40.1570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains | 0.53 | 46.0 | 4.16e-01 | 97.9% | 96.2% |
| 3exzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 42.0 | 3.69e-01 | 86.5% | 83.7% |
| 2je6I02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 42.0 | 4.40e-01 | 86.5% | 94.3% |
| 3n05A01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.52 | 37.0 | 2.66e-01 | 76.0% | 71.6% |
| 2c2nA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.52 | 30.0 | 3.33e-01 | 100.0% | 71.4% |
| 3e82E02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.50 | 38.0 | 3.04e-01 | 81.2% | 76.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010418 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.71 | 40.0 | 4.13e-01 | 100.0% | 57.8% |
| 5065035 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 43.0 | 4.79e-01 | 100.0% | 78.7% |
| 3810482 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.68 | 42.0 | 3.76e-01 | 100.0% | 44.4% |
| 4992321 | 1001.1.1.0 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 | 0.67 | 33.0 | 4.12e-01 | 72.9% | 76.7% |
| 4429352 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 34.0 | 3.54e-01 | 99.0% | 54.4% |
| 3172156 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.64 | 45.0 | 4.45e-01 | 75.0% | 83.8% |
| 3784708 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.62 | 44.0 | 4.64e-01 | 74.0% | 91.8% |
| 4315771 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.62 | 39.0 | 4.55e-01 | 89.6% | 95.4% |
| 3226147 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.60 | 43.0 | 4.57e-01 | 77.1% | 91.8% |
| 4939996 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.59 | 40.0 | 3.97e-01 | 70.8% | 94.3% |
| 3610835 | 206.1.3.4 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme | 0.59 | 47.0 | 3.41e-01 | 87.5% | 71.7% |
| 4079979 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.58 | 44.0 | 4.55e-01 | 91.7% | 87.8% |
| 3593756 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 42.0 | 3.96e-01 | 77.1% | 80.0% |
| 3998934 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 42.0 | 4.11e-01 | 78.1% | 98.1% |
| 4623446 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.56 | 42.0 | 3.94e-01 | 80.2% | 95.2% |
| 5080202 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.56 | 43.0 | 3.98e-01 | 82.3% | 92.0% |
| 3710460 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.56 | 35.0 | 3.40e-01 | 100.0% | 56.0% |
| 3990949 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.54 | 37.0 | 2.61e-01 | 93.8% | 23.9% |
| 651 | 4.21.1.1 ↗ | beta barrels › SH3 › ImpE-like › ImpE-like › ImpE | 0.53 | 40.0 | 3.34e-01 | 82.3% | 66.1% |
| 3968675 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 36.0 | 3.33e-01 | 77.1% | 53.1% |
| 5080820 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 41.0 | 3.52e-01 | 87.5% | 70.3% |
| 5014673 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.52 | 39.0 | 4.25e-01 | 100.0% | 93.8% |
| 5034824 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 36.0 | 2.41e-01 | 72.9% | 27.8% |
| 5046188 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 37.0 | 4.06e-01 | 77.1% | 100.0% |
| 3615993 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 39.0 | 3.94e-01 | 83.3% | 83.2% |
| 4009818 | 3268.1.1.1 ↗ | a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI | 0.51 | 35.0 | 3.52e-01 | 71.9% | 100.0% |
| 3478976 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.51 | 44.0 | 4.17e-01 | 99.0% | 89.6% |