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term4_saliva_scaffold_1_prodigal-single.1__X__X__00243

Bact-Vir

term4_saliva_scaffold_1_prodigal-single.1__X__X__00243

Identity

Kingdom:
phage

Quality

77.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-152_283-295
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.57 35.0 3.87e-01 80.7% 76.9%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 31.0 3.44e-01 80.7% 65.3%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 32.0 3.85e-01 88.0% 93.7%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.51 30.0 3.40e-01 81.3% 75.2%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 26.0 3.08e-01 80.7% 69.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3576800 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.52 31.0 3.79e-01 97.3% 92.6%
3510681 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 27.0 3.66e-01 85.3% 100.0%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 27.0 3.20e-01 76.0% 77.7%
D2 high residues 156-276
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cr3A00 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.63 43.0 3.71e-01 71.1% 100.0%
4k90A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.56 40.0 3.47e-01 72.7% 73.4%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.55 21.0 3.16e-01 77.7% 82.4%
1rypK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 42.0 3.59e-01 81.0% 98.5%
2dawA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.55 40.0 3.90e-01 76.0% 85.0%
1g8pA02 1.10.8.80 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain 0.55 33.0 3.97e-01 71.1% 93.6%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 42.0 3.89e-01 100.0% 63.8%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 43.0 3.86e-01 100.0% 61.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 27.0 3.26e-01 93.4% 73.4%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 28.0 3.09e-01 81.8% 62.0%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 41.0 3.76e-01 100.0% 62.8%
4bwiB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 39.0 3.38e-01 82.6% 52.4%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 38.0 3.44e-01 79.3% 93.3%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.50 26.0 3.51e-01 86.0% 95.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.50 26.0 3.27e-01 93.4% 80.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3320473 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 47.0 3.42e-01 89.3% 99.7%
3503257 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.56 39.0 4.26e-01 72.7% 87.8%
3834402 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 44.0 3.25e-01 86.0% 100.0%
3802164 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.54 43.0 3.15e-01 85.1% 100.0%
3805053 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.54 43.0 3.22e-01 85.1% 100.0%
3453746 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.53 44.0 3.29e-01 90.1% 94.9%
3226757 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.53 36.0 4.16e-01 70.2% 98.8%
3815611 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 42.0 3.14e-01 84.3% 99.3%
3897425 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.53 36.0 4.13e-01 71.1% 100.0%
3487926 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.52 36.0 4.12e-01 71.1% 100.0%
None — 0.52 42.0 3.12e-01 86.8% 100.0%
3823160 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.52 43.0 3.11e-01 88.4% 98.8%
3814902 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.51 28.0 3.41e-01 71.9% 84.0%
3784576 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 30.0 3.20e-01 95.0% 66.7%
3831780 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.51 25.0 2.81e-01 89.3% 59.0%
4938267 206.1.3.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.50 40.0 3.48e-01 86.8% 78.0%