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term4_saliva_scaffold_1_prodigal-single.1__X__X__00249

Bact-Vir

term4_saliva_scaffold_1_prodigal-single.1__X__X__00249

Identity

Kingdom:
phage

Quality

75.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-178
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 34.0 3.80e-01 100.0% 65.1%
2xzsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 28.0 3.43e-01 100.0% 62.6%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 26.0 3.79e-01 77.3% 92.9%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 29.0 3.55e-01 100.0% 73.6%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.57 40.0 4.20e-01 90.8% 79.8%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 30.0 3.13e-01 98.6% 52.7%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 28.0 3.61e-01 92.2% 86.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.53 22.0 2.93e-01 70.9% 71.6%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.51 32.0 3.76e-01 95.7% 92.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587259 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.62 29.0 3.60e-01 90.8% 70.0%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.61 36.0 3.45e-01 100.0% 49.4%
4366434 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 28.0 3.81e-01 90.1% 91.4%
3981111 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.57 30.0 2.90e-01 100.0% 43.2%
3932156 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.57 25.0 3.53e-01 97.9% 87.7%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 27.0 3.47e-01 76.6% 82.7%
3249582 896.1.1.3 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.54 28.0 3.54e-01 92.2% 89.3%
3970166 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.54 27.0 3.06e-01 83.7% 62.0%
2066839 3504.4.1.1 ↗ beta barrels › MutM N-terminal domain-like › An uncharacterized protein › An uncharacterized protein › NGO_1070-like 0.52 33.0 3.70e-01 81.6% 82.9%
3492441 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 24.0 3.13e-01 80.1% 78.7%
4961490 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.51 34.0 3.42e-01 100.0% 65.7%
3998091 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.51 23.0 3.09e-01 81.6% 83.1%