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term4_saliva_scaffold_1_prodigal-single.1__X__X__00264
Bact-Virterm4_saliva_scaffold_1_prodigal-single.1__X__X__00264
Identity
- Kingdom:
- phage
Quality
53.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-122
D2
medium
residues 135-275
D3
medium
residues 276-369
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 45.0 | 4.05e-01 | 90.4% | 84.6% |
| 1t9hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 27.0 | 3.02e-01 | 70.2% | 57.5% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 27.0 | 3.18e-01 | 74.5% | 70.5% |
| 3zl8A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.52 | 44.0 | 3.39e-01 | 94.7% | 89.8% |
| 8f5dA05 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.51 | 42.0 | 3.27e-01 | 93.6% | 93.2% |
| 1v43A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 28.0 | 3.20e-01 | 71.3% | 75.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3979711 | 252.2.1.6 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 | 0.62 | 25.0 | 3.02e-01 | 77.7% | 52.3% |
| 3484776 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 41.0 | 3.76e-01 | 76.6% | 95.0% |
| 3520221 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.56 | 29.0 | 2.80e-01 | 74.5% | 41.0% |
| 3511590 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 35.0 | 3.40e-01 | 81.9% | 59.0% |
| 3805018 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.53 | 43.0 | 2.99e-01 | 89.4% | 94.0% |
| 5082482 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.53 | 31.0 | 3.38e-01 | 80.9% | 70.7% |
| 4959480 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.53 | 33.0 | 3.95e-01 | 85.1% | 98.3% |
| 4964178 | 319.1.1.29 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › DUF7127 | 0.52 | 30.0 | 3.37e-01 | 75.5% | 72.6% |
| 1877235 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.52 | 33.0 | 3.35e-01 | 87.2% | 65.6% |
| 3793797 | 5.1.5.93 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N | 0.51 | 35.0 | 2.45e-01 | 71.3% | 32.8% |
| 3209881 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.50 | 37.0 | 2.27e-01 | 77.7% | 16.2% |