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term4_saliva_scaffold_1_prodigal-single.1__X__X__00268
Bact-Virterm4_saliva_scaffold_1_prodigal-single.1__X__X__00268
Identity
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-92
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.66 | 49.0 | 3.93e-01 | 84.8% | 40.1% |
| 3ci0K01 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.65 | 45.0 | 4.30e-01 | 73.9% | 62.5% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 49.0 | 4.10e-01 | 80.4% | 96.0% |
| 3os7A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.62 | 56.0 | 3.81e-01 | 100.0% | 97.6% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.61 | 50.0 | 3.73e-01 | 89.1% | 35.7% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.61 | 49.0 | 3.68e-01 | 89.1% | 46.7% |
| 2htaA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.60 | 53.0 | 3.77e-01 | 100.0% | 94.3% |
| 4oocA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.59 | 43.0 | 3.11e-01 | 76.1% | 94.8% |
| 4dokA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.59 | 52.0 | 4.35e-01 | 96.7% | 81.3% |
| 2zf3C00 | 2.50.20.30 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.59 | 47.0 | 3.80e-01 | 87.0% | 44.0% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.57 | 38.0 | 4.05e-01 | 76.1% | 77.5% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.57 | 42.0 | 3.36e-01 | 78.3% | 68.4% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.56 | 46.0 | 3.44e-01 | 90.2% | 35.0% |
| 1avgI00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 37.0 | 3.24e-01 | 73.9% | 43.7% |
| 1o7dD01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.55 | 47.0 | 3.44e-01 | 94.6% | 96.2% |
| 4it7A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 46.0 | 4.36e-01 | 89.1% | 99.1% |
| 7ufsA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.55 | 45.0 | 3.27e-01 | 89.1% | 95.4% |
| 4o4oA00 | 2.40.128.590 | Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain | 0.55 | 48.0 | 3.77e-01 | 97.8% | 56.3% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.54 | 44.0 | 3.71e-01 | 88.0% | 65.8% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.54 | 43.0 | 4.12e-01 | 96.7% | 73.6% |
| 1a5yA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 47.0 | 3.38e-01 | 100.0% | 48.6% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 46.0 | 4.17e-01 | 97.8% | 98.5% |
| 4uv3E01 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.53 | 43.0 | 3.38e-01 | 89.1% | 75.9% |
| 2wjsA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 3.42e-01 | 87.0% | 65.1% |
| 3obaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 44.0 | 3.19e-01 | 95.7% | 96.2% |
| 4ge6A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 41.0 | 2.85e-01 | 83.7% | 28.4% |
| 4fwwA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 45.0 | 2.95e-01 | 100.0% | 39.6% |
| 3qcmA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 46.0 | 3.29e-01 | 100.0% | 45.5% |
| 1zc3B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.59e-01 | 77.2% | 97.2% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 45.0 | 3.28e-01 | 100.0% | 47.4% |
| 3rwxA02 | 2.40.128.350 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 38.0 | 3.49e-01 | 82.6% | 69.7% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.33e-01 | 76.1% | 93.7% |
| 2bzlA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 44.0 | 3.21e-01 | 100.0% | 49.3% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 35.0 | 3.22e-01 | 82.6% | 55.0% |
| 4qunA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 45.0 | 3.22e-01 | 100.0% | 45.6% |
| 1yguA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.50 | 45.0 | 3.22e-01 | 100.0% | 47.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3829563 | 897.1.1.0 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 | 0.68 | 54.0 | 4.39e-01 | 94.6% | 46.7% |
| 4984404 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.65 | 54.0 | 4.57e-01 | 89.1% | 57.4% |
| 4011378 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.61 | 42.0 | 3.39e-01 | 70.7% | 63.6% |
| 3654131 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.60 | 51.0 | 4.24e-01 | 92.4% | 70.0% |
| 3992540 | 79.1.1.24 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Mlf1IP | 0.60 | 48.0 | 4.76e-01 | 85.9% | 85.3% |
| 2324048 | 1185.1.1.1 ↗ | a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › DUF6911 | 0.60 | 48.0 | 4.20e-01 | 85.9% | 84.1% |
| 3707830 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.59 | 48.0 | 3.35e-01 | 88.0% | 86.9% |
| 3453094 | 7520.1.1.0 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like | 0.58 | 52.0 | 4.07e-01 | 100.0% | 71.0% |
| 3791570 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.57 | 51.0 | 3.53e-01 | 100.0% | 48.1% |
| 3829053 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.56 | 41.0 | 3.57e-01 | 76.1% | 84.3% |
| 4029991 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 50.0 | 3.32e-01 | 100.0% | 27.6% |
| 3411753 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.55 | 48.0 | 3.44e-01 | 100.0% | 47.7% |
| 3496357 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.55 | 48.0 | 3.46e-01 | 100.0% | 46.7% |
| 3793856 | 5.1.4.421 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd | 0.54 | 41.0 | 2.46e-01 | 82.6% | 23.8% |
| 3879451 | 2007.2.3.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase, PTP-SAK | 0.54 | 48.0 | 3.34e-01 | 98.9% | 50.0% |
| 3265666 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 45.0 | 2.86e-01 | 96.7% | 48.0% |
| 3197766 | 5.1.4.119 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C | 0.54 | 46.0 | 2.74e-01 | 96.7% | 27.0% |
| 4670128 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.53 | 44.0 | 3.42e-01 | 94.6% | 39.1% |
| 3749143 | 243.3.1.20 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 | 0.53 | 46.0 | 4.14e-01 | 93.5% | 75.2% |
| 3930110 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 47.0 | 3.30e-01 | 100.0% | 45.2% |
| 3658278 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.53 | 47.0 | 3.21e-01 | 97.8% | 63.6% |
| 2808765 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.53 | 47.0 | 3.32e-01 | 100.0% | 46.2% |
| 3801135 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.53 | 47.0 | 3.34e-01 | 100.0% | 47.1% |
| 3714021 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.53 | 44.0 | 2.92e-01 | 93.5% | 31.1% |
| 4540639 | 243.1.1.5 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 | 0.52 | 39.0 | 3.51e-01 | 79.3% | 100.0% |
| 3911019 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.52 | 46.0 | 3.56e-01 | 100.0% | 65.0% |
| 3608325 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 47.0 | 3.02e-01 | 100.0% | 42.8% |
| 3469779 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.52 | 47.0 | 3.22e-01 | 100.0% | 44.4% |
| 4961766 | 241.15.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › Spo0M | 0.52 | 40.0 | 3.80e-01 | 84.8% | 83.5% |
| 4961742 | 2003.1.5.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth | 0.52 | 45.0 | 3.22e-01 | 100.0% | 59.3% |
| 3647885 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.52 | 46.0 | 3.21e-01 | 100.0% | 31.1% |
| 3740662 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 3.04e-01 | 96.7% | 97.6% |
| 4003224 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.51 | 44.0 | 3.57e-01 | 96.7% | 90.0% |
| 3546354 | 5.1.4.164 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 | 0.51 | 46.0 | 3.02e-01 | 98.9% | 38.7% |
| 3860966 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.51 | 36.0 | 2.51e-01 | 73.9% | 40.9% |
| 4010974 | 5.1.5.165 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Rrn6_beta-prop | 0.50 | 44.0 | 2.80e-01 | 96.7% | 80.6% |
| 1102013 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.50 | 41.0 | 3.28e-01 | 93.5% | 87.2% |
| 3797694 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.50 | 43.0 | 3.50e-01 | 96.7% | 93.3% |
| 3450584 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.50 | 43.0 | 3.01e-01 | 96.7% | 68.6% |
D2
medium
residues 93-176
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.69 | 46.0 | 4.82e-01 | 90.5% | 75.0% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.69 | 57.0 | 5.91e-01 | 88.1% | 100.0% |
| 3zsuA00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.67 | 44.0 | 3.89e-01 | 73.8% | 47.5% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 45.0 | 4.59e-01 | 76.2% | 71.6% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.66 | 47.0 | 5.12e-01 | 81.0% | 92.5% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.65 | 56.0 | 5.46e-01 | 95.2% | 93.4% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.65 | 47.0 | 4.97e-01 | 76.2% | 86.3% |
| 2gl2B00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 47.0 | 4.30e-01 | 76.2% | 62.4% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.64 | 48.0 | 5.20e-01 | 89.3% | 95.6% |
| 1v9vA01 | 1.20.1480.20 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like | 0.64 | 36.0 | 3.47e-01 | 72.6% | 48.4% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.63 | 46.0 | 4.54e-01 | 76.2% | 71.1% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 43.0 | 4.65e-01 | 71.4% | 88.7% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 42.0 | 4.30e-01 | 72.6% | 71.6% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.63 | 42.0 | 4.29e-01 | 75.0% | 71.6% |
| 3k17A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.62 | 45.0 | 3.80e-01 | 90.5% | 45.7% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 41.0 | 4.55e-01 | 77.4% | 89.1% |
| 1kxpD02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.61 | 43.0 | 4.28e-01 | 78.6% | 71.6% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 49.0 | 4.68e-01 | 89.3% | 92.0% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 46.0 | 4.40e-01 | 79.8% | 72.9% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.60 | 49.0 | 4.20e-01 | 88.1% | 63.2% |
| 4jioA02 | 1.20.140.50 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains | 0.60 | 48.0 | 4.02e-01 | 86.9% | 76.9% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 46.0 | 3.84e-01 | 89.3% | 48.3% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.59 | 37.0 | 3.66e-01 | 84.5% | 58.4% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.59 | 45.0 | 4.57e-01 | 84.5% | 81.2% |
| 3teqB00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 42.0 | 4.02e-01 | 77.4% | 64.4% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 39.0 | 3.90e-01 | 73.8% | 67.1% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 49.0 | 4.54e-01 | 95.2% | 79.1% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.58 | 42.0 | 4.36e-01 | 81.0% | 82.3% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.57 | 51.0 | 3.92e-01 | 98.8% | 95.1% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.55 | 41.0 | 3.88e-01 | 78.6% | 77.8% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 34.0 | 3.42e-01 | 78.6% | 62.7% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.54 | 42.0 | 4.46e-01 | 88.1% | 94.6% |
| 4ys0A02 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.54 | 49.0 | 3.89e-01 | 100.0% | 77.6% |
| 1zbtA01 | 6.10.140.1950 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 42.0 | 4.32e-01 | 85.7% | 96.4% |
| 3a7mA01 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.54 | 37.0 | 3.44e-01 | 72.6% | 55.5% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 43.0 | 4.35e-01 | 88.1% | 90.6% |
| 1owaA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 39.0 | 3.66e-01 | 78.6% | 62.3% |
| 3a98A02 | 1.20.1270.350 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Dedicator of cytokinesis N-terminal subdomain | 0.53 | 40.0 | 4.02e-01 | 94.0% | 78.2% |
| 2hz8A00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.53 | 43.0 | 3.95e-01 | 91.7% | 97.4% |
| 1hciA03 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 38.0 | 3.41e-01 | 77.4% | 55.0% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.52 | 37.0 | 3.14e-01 | 78.6% | 42.2% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.52 | 43.0 | 3.62e-01 | 91.7% | 80.4% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.50 | 42.0 | 3.96e-01 | 96.4% | 75.7% |
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 44.0 | 3.10e-01 | 97.6% | 44.3% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4295625 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.69 | 43.0 | 4.86e-01 | 88.1% | 86.7% |
| 3785344 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.66 | 51.0 | 4.54e-01 | 83.3% | 95.8% |
| 5010020 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.65 | 45.0 | 4.08e-01 | 88.1% | 53.0% |
| 5027990 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.65 | 46.0 | 4.80e-01 | 81.0% | 80.8% |
| 4216342 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.64 | 41.0 | 4.37e-01 | 97.6% | 73.3% |
| 4312332 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.64 | 45.0 | 4.55e-01 | 83.3% | 72.9% |
| 5060491 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.63 | 46.0 | 4.11e-01 | 77.4% | 60.0% |
| 4676221 | 1188.1.1.3 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Mntp | 0.63 | 48.0 | 3.75e-01 | 83.3% | 68.1% |
| 3611033 | 3681.1.1.0 ↗ | a+b complex topology › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit › Helical hairpin insertion in E. coli DNA-directed RNA polymerase beta subunit | 0.60 | 42.0 | 3.74e-01 | 89.3% | 52.2% |
| 3610930 | 611.4.1.2 ↗ | alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like › Acyl-CoA_dh_C | 0.60 | 47.0 | 4.06e-01 | 83.3% | 60.0% |
| 4943558 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.60 | 48.0 | 4.18e-01 | 85.7% | 96.0% |
| 3494616 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.60 | 40.0 | 4.04e-01 | 71.4% | 68.2% |
| 3459621 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.59 | 47.0 | 4.45e-01 | 90.5% | 72.0% |
| 4016091 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 47.0 | 4.70e-01 | 89.3% | 83.5% |
| 3359095 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.59 | 38.0 | 4.04e-01 | 81.0% | 74.7% |
| 4173934 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.58 | 52.0 | 3.55e-01 | 100.0% | 89.8% |
| 3167271 | 192.8.1.385 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med11 | 0.57 | 43.0 | 4.48e-01 | 81.0% | 86.3% |
| 4946169 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.57 | 48.0 | 3.54e-01 | 90.5% | 40.7% |
| 4250162 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.56 | 44.0 | 3.75e-01 | 83.3% | 57.8% |
| 4180833 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.56 | 42.0 | 3.01e-01 | 81.0% | 52.7% |
| 5012157 | 605.1.1.354 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 | 0.56 | 42.0 | 4.27e-01 | 89.3% | 80.0% |
| 3640310 | 5076.2.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › EI24 | 0.55 | 45.0 | 3.47e-01 | 100.0% | 92.6% |
| 5050536 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.55 | 33.0 | 3.57e-01 | 71.4% | 71.4% |
| 3663646 | 7064.1.1.5 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › ALMT | 0.55 | 38.0 | 3.35e-01 | 71.4% | 61.6% |
| 3784055 | 192.24.1.0 ↗ | alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain | 0.55 | 43.0 | 3.73e-01 | 84.5% | 82.3% |
| 3573038 | 4207.1.1.99 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF28139 | 0.55 | 48.0 | 4.76e-01 | 100.0% | 92.2% |
| 5050665 | 159.1.1.2 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG-like | 0.54 | 47.0 | 4.31e-01 | 100.0% | 73.6% |
| 3514850 | 5043.1.1.0 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like | 0.53 | 36.0 | 4.07e-01 | 77.4% | 100.0% |
| 3539986 | 5058.1.1.90 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › TMEM169 | 0.53 | 42.0 | 4.41e-01 | 94.0% | 96.0% |
| 3770340 | 5041.1.1.2 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM169 | 0.51 | 42.0 | 3.88e-01 | 94.0% | 70.5% |